BAC Information

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BAC

Clone NameMSMg01-337F23
Chromosome4 (Build37)
Map Location 13,079,260 - 13,264,109
singlet/doubletdoublet
Overlap genenone
Upstream gene6720467C03Rik, LOC545592, OTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337F23.T7 (MSMg01no337_f23.b1)MSMg01-337F23.TJ (MSMg01no337_f23.g1)
ACCAG452163AG452164
length772779
length of high quality
(start - end)
545 (41 - 585)466 (69 - 534)
definitionCHROMAT_FILE: MSMg01no337_f23.b1 PHD_FILE: MSMg01no337_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:44 2005CHROMAT_FILE: MSMg01no337_f23.g1 PHD_FILE: MSMg01no337_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,079,260 - 13,079,800)(13,263,644 - 13,264,109)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCTGCTTATAACGAGATTATGCCTTCCATGTAAGCTTGGACAGTGTTCTT
TGGGTTCATATACCAGCAGAAGAGTGGAGGAAATTTCCTCTCCAAAGAGA
GGAAAAGAATATGGTTGTTTACATTTTAGAGATGCCCTAATCCTATTGTT
CATAGGAACCAAAAGACAAGTACATACAGGACATTGTGAGAGAAATGTGA
CAAGAGGTCACAACTGCAATGTTCTTAGGCAGTAAAGAACCAAAGGAAGT
CACAAACAAGGAAGTGAAAGTTCCTTGGCCACATCTAAGGAGGAAAGCTA
CAAAAGCTATGCGCACGTTCTCCTCTAAGTTGGTGCTATTGTTTTCTGAC
ATACCACAACGCCATCATGGGGTTGCTGATTGGTTAGCAGTGCTGCTGCA
AGCTGATTTGTGTGCCTATCATAATACCCTGTCTGTATGTTCTCAAACAC
ACCAATTCACAACCCATACAATGGGGTCGCTTATTTTGAAGTTGAAATTA
AACATGATCTATTCATTTATTCCTATAAGAATTACNGAAATACTANGAGA
ACCTTTACTTTGTATGCAGTATACTAGAGACATTTGACTTCCTTCAATCA
ACCTAGCTTTGACTTATACAAATTTCTAGGAAACACTTGGGGTAGAAGCA
ATAATATAAACAAAGTTGGGAATTTTATCTTCTTGTCCCCACGTAAATTG
AGAAAAATTTGTTAATAATGGG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGAGACTGTCTGTGAGGTACGAAGGACTTAG
TGGATGGTTGTGTTGTCTGTGTGTCAAGCTTGTGTTTGCAATGGAAAAAT
CTGAGGCTATTATCAAAGCTGTTAAGGAAACCACTCCTTACTGCTTATAA
TCTAATGCCTGCCTCTCCCTCGATTAACTCCCCATTTAAAGAGCTGTACT
GTGATGTGTTTGCAAGATCTTTGTGCAACACAGATTAAATTATTAGTTTT
GAGATATAATTTAGGAGTTAGTTCACGTAAACAAATTATTTTTATGCCCC
TTTTCCATTCCCAGTTCACTACAGCATCTTATCATTTATGGCTCAAAAAG
GCATGAATCTTGCTCCACCTTGACAGATTTCATCCTATTGCCACTAAGGT
AGAAACACCTTCATTTGCTGGTAGGTTATATTGGCTTTAACTTTCTATAG
CCCGAAAGTGAATTTTGTGTTTAGTGCATTAAGATAGCCTAGTCTCCATC
ATCTAGACAGTACCCTGGACATGTCACTCATTACACTGTCATCACAGTAT
CATGGGCTAAAGACACACGTGTAAATTCCGAAATGGGACTGAATCTAGAT
TCCGGGGATGGGTCCAAGCCATTTAAAAACCCGGCTAACCCTCCCGGGTT
AAAACGGTTCCTCCGAAGGGTGGTTATAAAATTTTGGACTTGGGTTCTCA
AATCCCAAAAAAATCCCCCCCCGTGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_f23.b1 MSMg01no337_f23.b1 CHROMAT_FILE:
MSMg01no337_f23.b1 PHD_FILE: MSMg01no337_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:44 2005
         (545 letters)



>mm_chr4_13079056_13080000
          Length = 945

 Score = 1015 bits (525), Expect = 0.0
 Identities = 537/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctgcttataacgagattatgccttccatgtaagcttggacagtgttctttggg 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctgcttagaatgagattatgccttccatgtaagcttggacagtgttctttggg 264

                                                                       
Query: 65  ttcatataccagcagaagagtggaggaaatttcctctccaaagagaggaaaagaatatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcatataccagcagaagagtggaggaaatttcctctccaaagagaggaaaagaatatgg 324

                                                                       
Query: 125 ttgtttacattttagagatgccctaatcctattgttcataggaaccaaaagacaagtaca 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtttacattttagagatgacctaatcctattgttcataggaaccaaaagacaagtaca 384

                                                                       
Query: 185 tacaggacattgtgagagaaatgtgacaagaggtcacaactgcaatgttcttaggcagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacaggacattgtgagagaaatgtgacaagaggtcacaactgcaatgttcttaggcagta 444

                                                                       
Query: 245 aagaaccaaaggaagtcacaaacaaggaagtgaaagttccttggccacatctaaggagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaaccaaaggaagtcacaaacaaggaagtgaaagttccttggccacatctaaggagga 504

                                                                       
Query: 305 aagctacaaaagctatgcgcacgttctcctctaagttggtgctattgttttctgacatac 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagctacaaaagctatgggcacgttctcctctaagttggtgctattgttttctgacatac 564

                                                                       
Query: 365 cacaacgccatcatggggttgctgattggttagcagtgctgctgcaagctgatttgtgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacaacgccatcatggggttgctgattggttagcagtgctgctgcaagctgatttgtgtg 624

                                                                       
Query: 425 cctatcataataccctgtctgtatgttctcaaacacaccaattcacaacccatacaatgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctatcataataccctgtctgtatgttctcaaacacaccaattcacaacccatacaatgg 684

                                                                       
Query: 485 ggtcgcttattttgaagttgaaattaaacatgatctattcatttattcctataagaatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggtcgcttattttgaagttgaaattaaacatgatctattcatttattcctataagaatta 744

            
Query: 545 c 545
           |
Sbjct: 745 c 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no337_f23.g1 MSMg01no337_f23.g1 CHROMAT_FILE:
MSMg01no337_f23.g1 PHD_FILE: MSMg01no337_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:44 2005
         (466 letters)



>mm_chr4_13263444_13264309
          Length = 866

 Score =  886 bits (458), Expect = 0.0
 Identities = 464/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagactgtctgtgaggtacgaaggacttagtggatggttgtgttgtctgtgtgtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctgagactgtctgtgaggtacgaaggacttagtggatggttgtgttgtctgtgtgtcaag 607

                                                                       
Query: 61  cttgtgtttgcaatggaaaaatctgaggctattatcaaagctgttaaggaaaccactcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cttgtgtttgcaatggaaaaatctgaggctattatcaaagctgttaaggaaaccactcct 547

                                                                       
Query: 121 tactgcttataatctaatgcctgcctctccctcgattaactccccatttaaagagctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tactgcttataatctaatgcctgcctctccctcgattaactccccatttaaagagctgta 487

                                                                       
Query: 181 ctgtgatgtgtttgcaagatctttgtgcaacacagattaaattattagttttgagatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctgtgatgtgtttgcaagatctttgtgcaacacagattaaattattagttttgagatata 427

                                                                       
Query: 241 atttaggagttagttcacgtaaacaaattatttttatgccccttttccattcccagttca 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atttaggagttagttcatgtaaacaaattatttttatgccccttttccattcccagttca 367

                                                                       
Query: 301 ctacagcatcttatcatttatggctcaaaaaggcatgaatcttgctccaccttgacagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctacagcatcttatcatttatggctcaaaaaggcatgaatcttgctccaccttgacagat 307

                                                                       
Query: 361 ttcatcctattgccactaaggtagaaacaccttcatttgctggtaggttatattggcttt 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 306 ttcatcctattgccactaaggtagaaacaccttcatttgctggtagattatattggcttt 247

                                                         
Query: 421 aactttctatagcccgaaagtgaattttgtgtttagtgcattaaga 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aactttctatagcccgaaagtgaattttgtgtttagtgcattaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)