BAC Information

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BAC

Clone NameMSMg01-337H15
Chromosome4 (Build37)
Map Location 149,819,383 - 149,819,792
singlet/doubletsinglet
Overlap geneRere
Upstream geneRbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091
Downstream geneSlc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337H15.T7 (MSMg01no337_h15.b1)MSMg01-337H15.TJ (MSMg01no337_h15.g1)
ACCAG452243AG452244
length7601,628
length of high quality
(start - end)
514 (38 - 551)---
definitionCHROMAT_FILE: MSMg01no337_h15.b1 PHD_FILE: MSMg01no337_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:52 2005CHROMAT_FILE: MSMg01no337_h15.g1 PHD_FILE: MSMg01no337_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTC
TGCCATTTGTCATCCCTCTCTATAGACTCCTTGGCCTCCTGCATTGTGTC
TTCTTACTTGAGCTACTGTAACCATAATAATGTTTCAATTTCTACAGATT
AAATAGTCAAGGATCACCTGTTCCTATGTCTCTTATAAATGATTCAATTA
TGCACTCCGTACATTCCCAGCTATTTGGGTTTTGTTTGTTTGTTTGTGGT
TTTTTGTTGTTGTTGTTTTTCAAGACAGGGTTTGTCTGTGTACAACCCTG
GCTGTCCTGGAACTCACTCTGTATACCAGGCTGGCCTCGAACTCAGAAGT
CCACGTGCCTCTGCCTCCCGAGTGCTGGGGTTAAAGGCGTGCGTGTGCCC
CCACGCCCAGTCCCAGCTACTTGCTGACACGTGTGTGCACATTGAGACTT
GCTGACATGTGTGTGCACATTGAGACTTGCTGACACGTGTGTGCACATTA
AGACTGACCATCAAAATGGAAACAAGTCACGGCACCAGATAAAGCAAACC
CAAAGCCTTATTCAATTGTGCAAAACAAAACACGGGGCTTTCTTTATTGT
ACCTTATAAGCGGGACACACGCTCTACTCAATTTCCCAACAACCAAAATT
ATAAAATAAAGTGCAGTCTCCTCCAACCCATCATGAAACATAATGAACCA
ATCCATTTACCTCCTGTCTGGAACAACAATGGCCCCTATTTGACATGTGT
TTTGCTATTT
CTAGACGAGTAAGTGGTATGAGGATGAGGATAGGGCAGTAGAAGCACTAC
CCATATCGCTCTGCTGTTCGTGCGCTTCGCGTCGANCGTACGAGCGGCTC
GCCCGTCCGGCAGTATGTGTCGAGTTCTGCTTAGTCGCGTCAGGCAGTGA
ACTATAGTAGTCTCCGCTTCATATCTCTCTATCGACCTATGATAATAGTC
ATCAATACTGAATCGCATTGATAGCACATAATTGGCTATAGGTATATACT
TACTATCNCAGTATCGCGGGCGNCGCGGCACGCTTCAATAGCGCGTGTGC
GACGCGAGCANTACGATGACGATACGACGAGTGAAGTCTGCAGTCCTGTG
AACTACGCTCACGANGGGTGTGTGAGTATGCGTNCANACTTGATATATAT
AGCGTATGCACACGCTGTAACTGATACAGCGCGCCATACTGTAGAGGTGA
CTGATAGTNACGAATACGCGACGCATAGTCTGATTGTAGAATAGTAATCA
CATTTTGATGACATATAAATATATTATGCCGCACTCACNTCACTGCCGCT
CGACTATATGCATATTACTCACGGCTACTTGTNTNTATCGTCTTTNCANA
CACGACTTGACCCACACTCTCAGCTATTAGATATGCAACGTATATATACG
ACAGCACGTCAGACGGAGACATTATCTTTAGTACACGATCCGCGATAGAC
GCCATATCACACAGTAACGCTCNANCACGCGTGCCACACAACTACGTCAG
NACATGTATGCATCACAACACCCTAAACAACAATAGCATGCATCTCATAT
GTTGACTGACGGCCTGTCTCAGCGAATCTATCGTNGCTCCTACCGCTGCC
GCACTTGCGCGTTATGCTACTGTCGCTTGTCTTCGTATACGTCCGTCGTG
TGCTTGCCGCCTGCCCGCGCGATGCGCGATGGACGCATAATACATATCTG
AATCGTTAATTATGATGCATGCACGTACTCGCGCGCGANTNGGACGTACG
ATATGTATATATATACATCGTATGACTCATGCTCTATTACGCATGCATGT
GCGATCGATNTACCTNCGCTGAATCGCGCGACTATGACGCGTCTATACAT
TCGTGTTATGATGTTAATATGCGTGCGCGAGCACACGACACACAGCGAAT
CAACATTCGCGTACGAGTACAGTAATAAATGACATCAGCGTGTCGGCGAC
GTCANCGTGTCACTCATAAACGACGCATGTATAATAGCGCGTCGTGATGC
CGGTCGTACGCATATGACGTACTTCGTCAGCGCGATACTGTCTCNCGTCC
GTCGGTTCACTAATCTTGACAGAATGTATCTAGCTATCACGTATTCGACG
ACCGATGCATATCACTANTNATCTATACTGTATCGCTCTTCTAATCATGA
CACCTTATCTGTCTGACAACATGCTCTGCTTATCCTACGACGTCGTATAT
ATATCGCGCACCTGCACTCTATATCGACGTATATTATATACATGTCGTAC
ATGATGAACAGATGTACTAGTATCATATCACCCAGCGATCATACTACCAC
CGCGTACATATTATCGCTCACGGCAGCGTCGTGGTAATCTCTCATGTGAT
GTTTCTATTGCACATGCGGTCTAGCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_h15.b1 MSMg01no337_h15.b1 CHROMAT_FILE:
MSMg01no337_h15.b1 PHD_FILE: MSMg01no337_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:52 2005
         (514 letters)



>mm_chr4_149819383_149820296
          Length = 914

 Score =  727 bits (376), Expect = 0.0
 Identities = 396/410 (96%), Gaps = 12/410 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctgccatttgtcatccctctctatagactccttggcctcctgcattgtgtctt 65
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 410 gaattctctgccatttgtcatccctctctatagactccttggcctcctgcattgcgtctt 351

                                                                       
Query: 66  cttacttgagctactgtaaccataataatgtttcaatttctacagattaaatagtcaagg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cttacttgagctactgtaaccataataatgtttcaatttctacagattaaatagtcaagg 291

                                                                       
Query: 126 atcacctgttcctatgtctcttataaatgattcaattatgcactccgtacattcccagct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atcacctgttcctatgtctcttataaatgattcaattatgcactccgtacattcccagct 231

                                                                       
Query: 186 atttgggt------------tttgtttgtttgtttgtggttttttgttgttgttgttttt 233
           ||||||||            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 atttgggttttgtttgtttgtttgtttgtttgtttgtggttttttgttgttgttgttttt 171

                                                                       
Query: 234 caagacagggtttgtctgtgtacaaccctggctgtcctggaactcactctgtataccagg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 170 caagacagggtttgtctgtgtacaaccctggctgtcctggaactcactctgtagaccagg 111

                                                                       
Query: 294 ctggcctcgaactcagaagtccacgtgcctctgcctcccgagtgctggggttaaaggcgt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctggcctcgaactcagaagtccacgtgcctctgcctcccgagtgctggggttaaaggcgt 51

                                                             
Query: 354 gcgtgtgcccccacgcccagtcccagctacttgctgacacgtgtgtgcac 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  gcgtgtgcccccacgcccagtcccagctacttgctgacacgtgtgtgcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)