BAC Information

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BAC

Clone NameMSMg01-337L22
Chromosome4 (Build37)
Map Location 131,543,921 - 131,544,560
singlet/doubletsinglet
Overlap geneEpb4.1
Upstream geneLOC622681, LOC100041575, Gm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230
Downstream geneLOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337L22.T7 (MSMg01no337_l22.b1)MSMg01-337L22.TJ (MSMg01no337_l22.g1)
ACCAG452444AG452445
length765776
length of high quality
(start - end)		649 (38 - 686)452 (68 - 519)
definitionCHROMAT_FILE: MSMg01no337_l22.b1 PHD_FILE: MSMg01no337_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:13 2005CHROMAT_FILE: MSMg01no337_l22.g1 PHD_FILE: MSMg01no337_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
GGTCTGCCTAGTATTTATTAATGAATCTTTTTACTTGTGTATTATTTTAC
TTATTTATATCAAGACACGGTTTCTCAGTGTAGCCCCGGCTATCCTGGAA
CTGGTAGACCAGGGTGGCCTCAGATTCAGAGATCTGCCTGTCTCTGCCTC
CCAAGTGCTGGGACTAAAGTTGTGTATCACCACACCTGGCCTGCATTATT
TTAAGACTATGTATTTCATATATTATTGACTGAATTAATCCATCCAAATG
TTGACACATTTCAGCATACAATATTTATTTTTAAAACCGCATTGGTTAAA
ACACTACTAATCTCAGCTGTGCAGTGGTGGTGTGCTCATAATGTCTACAC
TGAGAAGGTGGAGGCAGGAGGATCAAGAGTTGCAGCCACGCATACTAGAA
TTTAAAAGGAAAGGTGGGGGGGGGGAGCAAGGAGGGAGAGAGATTAGTTT
CTGTTTTGTTTTAATACACTTATTTACACAAATGCATGCCATCGTACATG
TATGAGGGTCAGAGAACAACTCGAAGGAATTGGATATCTCCTTCTTCCAT
GTGGGTTCTGGGGACTGAAGTCAGCTTTATCAAGTTTGGTAGCCAATGTC
TTTACTCACTGAACTAACTATCTTACAGATCCCTGGAAGAAAACTCTTCA
GTGAACAGACCTTTTTTACAGTATGTCTGCGTGTTTTGCTATGTATATGT
GTACACGGNGGCTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCCTGCCCTCCTGCCCTTCTCTGGCCTCTGGT
TGGTTGGTTTGGTTATTTAATTGCTTTTTATTTGGATTTATTTTATTTTG
TGTGTATGAGGGCTTTGCCTGCATGTATATCTATTCACTATATGGATTTG
TGGTACCTGTGAAAGTAGTGAGCCTCCATACAGGTGCTGGGAATTGAACC
CAGGTCCTTTTGCAAGAACAACAAGCACTCTTAACCACCAAGCCAGTTCT
CCAGCCCCATAAGCATCAGGCTTGTTTGGGTTTTTTTGTTTTTGTTTTTG
TTTTTGTTTGTTTGTTTGTTTTGTTTTTTGAGCCAGGGTTTCTCTGTGTA
ACAGCCTTGACTGTCCTGGAACTCACTTTATAGACCAGACTGGCCTCTTC
TTACCAGTCTAGGATGTGAGAAAGAACCTTACCCTGCCCCAGTCTTTATG
ATGAAGACTCTGCTCTGGGACAGTTGCCTCCATACCTAAGTCCCTGCTTT
ACCCAGGCCCTGTACAGAAGGGACTACGGTTATATGTGTTAGCCACACAA
GCTGCTCTATGGATGGTTGTGTGACGTGCATAATCGGGAAAATGCTTCCT
ATGTTATGCAAAATTTTGGTGCATGCTCTAGTCCCGGTACTCGCCTTTTT
TTCCTAATTTTTATCGCGTTAAATGTCTATCTATCTCCCTATAGGTTTCT
TCGTCTTCTACCACCTTCTCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_l22.b1 MSMg01no337_l22.b1 CHROMAT_FILE:
MSMg01no337_l22.b1 PHD_FILE: MSMg01no337_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:13 2005
         (649 letters)



>mm_chr4_131543717_131544765
          Length = 1049

 Score = 1195 bits (618), Expect = 0.0
 Identities = 636/644 (98%), Gaps = 4/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggtctgcctagtatttattaatgaatctttttacttgtgtattattttact 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggtctgcctagtattttttaatgaatctttttacttgtgtattattttact 264

                                                                       
Query: 65  tatttatatcaagacacggtttctcagtgtagccccggctatcctggaactggtagacca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatttatatcaagacacggtttctcagtgtagccccggctatcctggaactggtagacca 324

                                                                       
Query: 125 gggtggcctcagattcagagatctgcctgtctctgcctcccaagtgctgggactaaagtt 184
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 325 gggtggcctcagattcagagatttgcctgtctctgcctcctaagtgctgggactaaagtt 384

                                                                       
Query: 185 gtgtatcaccacacctggcctgcattattttaagactatgtatttcatatattattgact 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtaccaccacacctggcctgcattattttaagactatgtatttcatatattattgact 444

                                                                       
Query: 245 gaattaatccatccaaatgttgacacatttcagcatacaatatttatttttaaaaccgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaattaatccatccaaatgttgacacatttcagcatacaatatttatttttaaaaccgca 504

                                                                       
Query: 305 ttggttaaaacactactaatctcagctgtgcagtggtggtgtgctcataatgtctacact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttggttaaaacactactaatctcagctgtgcagtggtggtgtgctcataatgtctacact 564

                                                                       
Query: 365 gagaaggtggaggcaggaggatcaagagttgcagccacgcatactagaatttaaaaggaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaaggtggaggcaggaggatcaagagttgcagccacgcatactagaatttaaaaggaa 624

                                                                       
Query: 425 aggtggggggggggagcaaggagggagagagattagtttctgttttgttttaatacactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggtggggggggggagcaaggagggagagagattagtttctgttttgttttaatacactt 684

                                                                       
Query: 485 atttacacaaatgcatgccatcgtacatgtatgagggtcagagaacaactcgaaggaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atttacacaaatgcatgccatcgtacatgtatgagggtcagagaacaactcgaaggaatt 744

                                                                       
Query: 545 ggatatctccttcttccatgtgggttctggggactgaagtcagctttatcaagtttggta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggatatctccttcttccatgtgggttctggggactgaagtcagctttatcaagtttggta 804

                                                       
Query: 605 gccaatgtctttactcactgaactaactatcttacagatccctg 648
           |||||||||||||||||||||||||    |||||||||||||||
Sbjct: 805 gccaatgtctttactcactgaacta----tcttacagatccctg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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