Query= MSMg01no337_o10.b1 MSMg01no337_o10.b1 CHROMAT_FILE:
MSMg01no337_o10.b1 PHD_FILE: MSMg01no337_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:24 2005
(654 letters)
>mm_chr4_13379081_13380133
Length = 1053
Score = 1143 bits (591), Expect = 0.0
Identities = 636/653 (97%), Gaps = 7/653 (1%)
Strand = Plus / Minus
Query: 5 gaattctttttcc-tttcttctcccatctttccatttatagtggtgactgaattttgagc 63
||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 853 gaattctttttccattt-ttctcccatctttccatttatagtggtgactaaattttgagc 795
Query: 64 ctatctatcatttccaaagttttgttttgcagactttagtttttctaaaaagaaaagact 123
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 794 ctatctatcatttccaaagttttgttttgcagacttcagtttttctaaaaagaaaagact 735
Query: 124 cggtggtcttaaatacggtgtgattgcagcatgggttcatgctgcttttgtagtttctaa 183
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 734 cagtggtcttaaatacggtgtgattgcagtgtgggttcatgctgcttttgtagtttttaa 675
Query: 184 gacattctaacactatttaattagctaaaatttctcctctcttgagaactggaaactcaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gacattctaacactatttaattagctaaaatttctcctctcttgagaactggaaactcaa 615
Query: 244 tgaaatgtcaacaatgctggcagtctgcttcaggctaaactcattacacaaaaaccaaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgaaatgtcaacaatgctggcagtctgcttcaggctaaactcattacacaaaaaccaaag 555
Query: 304 gtaaaaatagtccaaggcaagagtcgttgtcataatgttgaagcccatacctatggcgat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 554 gtaaaaatagtccaaggcaagagtcgttgtcataatgttgaagcccatacctatgccgat 495
Query: 364 gcgacccagaaaggatcccatgaaaatgccaaattaggaaggggatctaatgaattatcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gcgacccagaaaggatcccatgaaaatgccaaattaggaaggggatctaatgaattatcc 435
Query: 424 tggcactggctgtaactgatcaccccttgcacagaaatttatctaattagtcaaatagca 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cggcactggctgtaactgatcaccccttgcacagaaatttatctaattagtcaaatagca 375
Query: 484 tcaagttttgcctaggactacttgagtgcaatgctcattgcttaatgaattgagttctga 543
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 374 tcaagttttgcctaggactacttgggtgcaatgctcattgcttaatgaattgagttctga 315
Query: 544 tttggaattctgtattctaagatgtatattgggtttttttttt--ccaccaagaaataaa 601
||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct: 314 tttggaattctgtattctaagatgtatattggg---tttttttccccaccaataaataaa 258
Query: 602 tagaaaataccatatcctgttaaggactggacataaatacttttatctgaatt 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tagaaaataccatatcctgttaaggactggacataaatacttttatctgaatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_o10.g1 MSMg01no337_o10.g1 CHROMAT_FILE:
MSMg01no337_o10.g1 PHD_FILE: MSMg01no337_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:24 2005
(479 letters)
>mm_chr4_13227640_13228521
Length = 882
Score = 893 bits (462), Expect = 0.0
Identities = 476/482 (98%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 1 attgcctacttcaaaactgttgttgggtagacgaaaagtattaaagggaaacatttgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgcctacttcaaaactgttgttgggtagacgaaaagtattaaagggaaacatttgccc 260
Query: 61 agagaaatagttacgacaattcacctggctgtagccaatattttccatgtatttaccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaaatagttacgacaattcacctggctgtagccaatattttccatgtatttaccatg 320
Query: 121 gtcaggggttccttgagttattacatcatatttataaagcaagcccatagggtaacagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaggggttccttgagttattacatcatatttataaagcaagcccatagggtaacagtt 380
Query: 181 ccattgttacgattttaaaatggaaat---aaaaaaaaacagagatattgggatttacaa 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ccattgttacgattttaaaatggaaattaaaaaaaaaaacagagatattgggatttacaa 440
Query: 238 ttgcaaataaaaaaagcatagtcagcactaagagattcaactttattgtgacatgtttcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcaaataaaaaaagcatagtcagcactaagagattcaactttattgtgacatgtttcc 500
Query: 298 ccgtaagactactgtgtgccaccctcaggcttctgagccaattgtccaagccacattagc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgtaagactactgtgtgccaccctcaggcttctgagccaattgtccaagccacattagc 560
Query: 358 taaactccatagcacctgcacttatcagctatgcagaatggttaacctctatcttcttga 417
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaactccatagcacctacatttatcagctatgcagaatggttaacctctatcttcttga 620
Query: 418 cagaacggagagggaaaatgtgggtaagttcaccagaagttgcatatccattgttaaatc 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagaacgaagagggaaaatgtgggtaagttcaccagaagttgcatatccattgttaaatc 680
Query: 478 tg 479
||
Sbjct: 681 tg 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 882
Length adjustment: 10
Effective length of query: 469
Effective length of database: 872
Effective search space: 408968
Effective search space used: 408968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
