BAC Information

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BAC

Clone NameMSMg01-338F19
Chromosome4 (Build37)
Map Location 51,812,353 - 51,812,916
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338F19.T7 (MSMg01no338_f19.b1)MSMg01-338F19.TJ (MSMg01no338_f19.g1)
ACCAG452910AG452911
length756844
length of high quality
(start - end)		567 (41 - 607)70 (71 - 140)
definitionCHROMAT_FILE: MSMg01no338_f19.b1 PHD_FILE: MSMg01no338_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:58 2005CHROMAT_FILE: MSMg01no338_f19.g1 PHD_FILE: MSMg01no338_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCTCTTCTCTCCTGGAGAGCCCTGTTAGGGCTGCCAGAGGTTCCAGTCT
CAGACCTTCCCAGGGCCCATGGAGTGACGAGTGACAATGCGTGGTCTCAC
TGATGAGCTTCCACTGTCCTTGTGAGACATTTTGTAAGTTGTATGAAATT
AACTATCATATAGTTTTCGTCATGGATATACGAGCCACTTTAAAAACTGT
CTTTTGCGACAGTTTACTGACAATGATCTATATTCCAGAAACTGAGCCAG
TTACAGGAAATAATGGAGCAAATGTGGCCTGCACAGCTATTGTGCTGACT
CCTAAACACAGATGCAAGTTAGCGCACAGGGAATTTCATGTTGCTACATC
GTGTACATGGTATAAACATGGCACATTTAGGAAAGTCAGGAGGGTGTATG
TGCAAAGCCTGAAAGTACTGAGAGGTGTTTAGAGGAAATGATATTTACAT
TTTTAAGCCTGAGGGATAAATGAAAATTAGCCAGGTGGAAATACTCATAA
CAGTGACAAACATAAGAAATAAGAGGTGTGGGTACCTGGAAGCAATAAAG
AACCTGAGGTGTTAGGACAAAGAATAATTTTTATACAGTTTCAGTACACT
GTTTGTTCGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTGTNTNT
GNGNNTTGGGGNGNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNTNNNNN
TTTTTT

GCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCCTCTTATAGACATATGATTTATTGGT
AGAGTGTTGAAGTCTACAAAAGTATAATTTCTACTCATTCCTACTCCTTT
TATCTCAGTTTTCCGAAGGTTCANNANATTCTACTCACTCCCATAAAACA
AAAGGAACTTTTCTCATTGNNNTTCCCTCGGGCTTAAGATGCTGGNNTTT
TTAATTTGGAGAAAAAAAGGTGGGCCTAAACATTGGAGCGGGGATTACTA
GGGGAGAAGACCCCCCGTCGGGCGCGGGGAGAGAAAGNNNNNNNCTCTCA
AANCCTNNNNGCGGGTAGGGAGGGGGGGNGGTGGGAGGGAGNTAAATGGT
GTTGAAGAGAGNAAGGAGATTNNCTTTNNNNNNNNTNNNTTTATCACAGA
ATTATTAGANNNNNNNNNNNNNNNNTNNNNNNNNNNNNGGGGGTGGGGGG
NNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGTGGGGGGGGGGCGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_f19.b1 MSMg01no338_f19.b1 CHROMAT_FILE:
MSMg01no338_f19.b1 PHD_FILE: MSMg01no338_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:58 2005
         (567 letters)



>mm_chr4_51812150_51813116
          Length = 967

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctcttctctcctggagagccctgttagggctgccagaggttccagtctcag 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggaattcacctcctctctcctggagagccctgttagggctgccagaggttccagtctcag 708

                                                                       
Query: 64  accttcccagggcccatggagtgacgagtgacaatgcgtggtctcactgatgagcttcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 accttcccagggcccatggagtgacgagtgacaatgcgtggtctcactgatgagcttcca 648

                                                                       
Query: 124 ctgtccttgtgagacattttgtaagttgtatgaaattaactatcatatagttttcgtcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ctgtccttgtgagacattttgtaagttgtatgaaattaactatcatatagttttcgtcat 588

                                                                       
Query: 184 ggatatacgagccactttaaaaactgtcttttgcgacagtttactgacaatgatctatat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggatatacgagccactttaaaaactgtcttttgcgacagtttactgacaatgatctatat 528

                                                                       
Query: 244 tccagaaactgagccagttacaggaaataatggagcaaatgtggcctgcacagctattgt 303
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 527 tccagcaactgagccagttacaggaaataatggagcaaatgtgccctgcacagctattgt 468

                                                                       
Query: 304 gctgactcctaaacacagatgcaagttagcgcacagggaatttcatgttgctacatcgtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gctgactcctaaacacagatgcaagttagcgcacagggaatttcatgttgctacatcgtg 408

                                                                       
Query: 364 tacatggtataaacatggcacatttaggaaagtcaggagggtgtatgtgcaaagcctgaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tacatggtataaacatggcacatttaggaaagtcaggagggtgtatgtgcaaagcctgaa 348

                                                                       
Query: 424 agtactgagaggtgtttagaggaaatgatatttacatttttaagcctgagggataaatga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 347 agtactgagaggtgtttagaggaaatgatatttacatttttaagcctgaaggataaatga 288

                                                                       
Query: 484 aaattagccaggtggaaatactcataacagtgacaaacataagaaataagaggtgtgggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaattagccaggtggaaatactcataacagtgacaaacataagaaataagaggtgtgggt 228

                                   
Query: 544 acctggaagcaataaagaacctga 567
           ||||||||||||||||||||||||
Sbjct: 227 acctggaagcaataaagaacctga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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