ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGTTCTTCTCTTAGGTTATAGGGAAGTCCATCTTACACGGTTGGCAG
GGGCTCAATAAACAATCACTGACTAGTAGCATTATCAGACAAGTTCTGTA
ATATGTTGACATATTGCTGAAGCATGTTATAGGATACAGAGAAGGAGATG
ACAAAATGCTTTGAAGTTAAAGAAGGTAAGTTTCCTAAAAACACATGAGG
GTATATGTGTACAATAATGTCTTCCATGGGTTGTGAAACACATTGAAGAT
TCATTATCAAAATCATGAAATACAGCAGAATATGGACTGTCTTGACATGT
TGATAATTACCTAAACTTATAGAAATTATATTGACCAGATTTTTTTACCG
CCATGATAACATAACTGCCATAAATAGCTTCAGGAAAAAAAGGATTTATT
AAAGTCAATAATTTTAGAGTTGCTCTGAACTGTCATCCAGCTATACTGCT
TCTGTGTCCTGGTTAAGGACACCATCATGGTGGTAGAGCATAAGGTATAG
GGTAGCTCACTTCACAACAGCTGAAAAATGGAGAAGAACAATAATAATAA
TTATAAACACTTTCATTATGTACTTATCCTAGCCATAAAATGGCAGAGGA
TATAGTACCACCCACCCATACTGAGAATAGATTCCATTTTCTTTCAATAT
TTCTGAAAATGTCCTTTATAACATACCTAAAATTGTACCTTAAA

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTCTTCCACTAGCAGCCTTTGAATGAAGA
CGTAGAACTCTCAGCTCTGCCTGCGCCATGCCTGCCTGGATACTGCCATG
CTCCCACCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCC
CAATTAAATGTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAG
CAGTAAAACCCTGACTAAGACAATCTGTATTCCCCATTTCTAATAGAGTT
ATTTGGTTCTCTGGAGTCTAAATTCCTGAGTTCTTTGTATATATTAGATA
TTAGCTATCTATCAGATGTAAGTAAGATTGGTAAATGTCTTACCCCAATC
TGTAGGTTGCCTTTATTTTTTTCTATTGACAGTGTCCTTTGCCTTACAGA
AGCTTTGCAATTTTATGAGGTCCCAATTGTAGATTCTTGATCTTAGAACA
TAAACCATTGGTGTTCTGTTCAGGAATTTTTGCCCTGTGCCCATGTGTTT
GAGGCTTTTCCCCACTTCTCTTCTATTAGATTTAGTGTATCTGGTCTGAG
GACCCAGCTATACAACTCCTGGGCATATACCCAAAGATGCTCTGACATGC
CTTAAGGATACATGATCCAATATGCTCATAGCAGACATATTTATTAAAGC
CGAAAATAGAAACAACCCATATGTCCCTCAAA

Query= MSMg01no338_p01.b1 MSMg01no338_p01.b1 CHROMAT_FILE:
MSMg01no338_p01.b1 PHD_FILE: MSMg01no338_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:41 2005
         (589 letters)



>mm_chr4_17629847_17630835
          Length = 989

 Score = 1031 bits (533), Expect = 0.0
 Identities = 569/581 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagttcttctcttaggttatagggaagtccatcttacacggttggcaggggctc 64
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 785 gaattctagttcttttcttaggttataaggaagtccatcttacacggttggcaggtgctc 726

                                                                       
Query: 65  aataaacaatcactgactagtagcattatcagacaagttctgtaatatgttgacatattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aataaacaatcactgactagtagcattatcagacaagttctgtaatatgttgacatattg 666

                                                                       
Query: 125 ctgaagcatgttataggatacagagaaggagatgacaaaatgctttgaagttaaagaagg 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ctgaagcatgttataggagacagagaaggagatgacaaaatgctttgaagttaaagaagg 606

                                                                       
Query: 185 taagtttcctaaaaacacatgagggtatatgtgtacaataatgtcttccatgggttgtga 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 605 taagtttcctaaaaacacatgagggtatatgtgtacaataatgtgttccatgggttgtga 546

                                                                       
Query: 245 aacacattgaagattcattatcaaaatcatgaaatacagcagaatatggactgtcttgac 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 545 aacacattgaagattcattatcaaaatcatgtaatacagcagaatatggactgtcttgac 486

                                                                       
Query: 305 atgttgataattacctaaacttatagaaattatattgaccagatttttttaccgccatga 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 485 atgttgataattacctaaacttatagaaattatactgaccagatttttttaccgccatga 426

                                                                       
Query: 365 taacataactgccataaatagcttcaggaaaaaaaggatttattaaagtcaataatttta 424
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 425 taacatacctgccataaatagcttcaggaaaaaaaggatttattaaagtcaatagtttta 366

                                                                       
Query: 425 gagttgctctgaactgtcatccagctatactgcttctgtgtcctggttaaggacaccatc 484
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaggtgctctgaattgtcatccagctatactgcttctgtgtcctggttaaggacaccatc 306

                                                                       
Query: 485 atggtggtagagcataaggtatagggtagctcacttcacaacagctgaaaaatggagaag 544
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 305 atggtggtagagcataaggtataggatagctcacttcacaacagctgaaaaatggagaag 246

                                                    
Query: 545 aacaataataataattataaacactttcattatgtacttat 585
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aacaataataataattataaacactttcattatgtacttat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)