Query= MSMg01no339_a07.b1 MSMg01no339_a07.b1 CHROMAT_FILE:
MSMg01no339_a07.b1 PHD_FILE: MSMg01no339_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:46 2005
(505 letters)
>mm_chr4_103500722_103501629
Length = 908
Score = 928 bits (480), Expect = 0.0
Identities = 500/508 (98%), Gaps = 3/508 (0%)
Strand = Plus / Plus
Query: 1 tttttaatttttctgtgttagtattaactgcatggtattggttgcttgggaagctatatt 60
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct: 201 tttttaatttttctgtgttagtattaactgcttggaattggttgcttgggaagctatgtt 260
Query: 61 gagaaatagttgaggtttccttttcctagggagtatggaacgggcaaagagttgttgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaatagttgaggtttccttttcctagggagtatggaacgggcaaagagttgttgata 320
Query: 121 gattagtgatgtctgcaatagacatgggggggaggggtagcatatgtgtttctgtgggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattagtgatgtctgcaatagacatgggggggaggggtagcatatgtgtttctgtgggcc 380
Query: 181 ctgcagggctagtacaagatggagcatcagtaaatgttagttgagtcgagtggagtttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcagggctagtacaagatggagcatcagtaaatgttagttgagtcgagtggagtttaa 440
Query: 241 acatatttattgtgcctctctcaatttttaagcaaataattgaagtggaatataaagaaa 300
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatagtcattgtgcctctctcaatttttaagcaaataattgaagtggaatataaagaaa 500
Query: 301 ctgaaatgggatacagggaaattaacatggaaat---attgcaggcacttgacaaactaa 357
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ctgaaatgggatacagggaaattaacatggaaatcatattgcaggcacttgacaaactaa 560
Query: 358 ttaaactgggaaatgcagctagattttctttggtgcataaacattcttcttcttcttttg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaactgggaaatgcagctagattttctttggtgcataaacattcttcttcttcttttg 620
Query: 418 caacaagggggtaagagcgacaagtgttcacattacacttttatgtgtgtgctcttccaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caacaagggggtaagagcgacaagtgttcacattacacttttatgtgtgtgctcttccaa 680
Query: 478 gcatgtgtggcactttgaagaaggctct 505
||||||||||||||||||||||||||||
Sbjct: 681 gcatgtgtggcactttgaagaaggctct 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 908
Length adjustment: 10
Effective length of query: 495
Effective length of database: 898
Effective search space: 444510
Effective search space used: 444510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_a07.g1 MSMg01no339_a07.g1 CHROMAT_FILE:
MSMg01no339_a07.g1 PHD_FILE: MSMg01no339_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:46 2005
(517 letters)
>mm_chr4_103678554_103679470
Length = 917
Score = 984 bits (509), Expect = 0.0
Identities = 515/517 (99%)
Strand = Plus / Minus
Query: 1 ttgacagagggtgagtcggtatggtgaggaggcgtcacagcagatgcacctgctgcctgg 60
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttgacagaggatgagtcggtacggtgaggaggcgtcacagcagatgcacctgctgcctgg 658
Query: 61 ggttatctaaagtgtcctgtagccagaatgagaaataaatacccccaaagcaagattggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggttatctaaagtgtcctgtagccagaatgagaaataaatacccccaaagcaagattggc 598
Query: 121 agcagctagcaaaccataaaacagtgtcagactttgtcttcatgggatagcaagtgttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agcagctagcaaaccataaaacagtgtcagactttgtcttcatgggatagcaagtgttct 538
Query: 181 gctactccaagggctgaaggcaccaccaaatattcatctctcatccctcctcttttctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gctactccaagggctgaaggcaccaccaaatattcatctctcatccctcctcttttctcc 478
Query: 241 ttcatcagtagagcaacaaacatggaaaatggaagattagtaatagtgtcactgacctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttcatcagtagagcaacaaacatggaaaatggaagattagtaatagtgtcactgacctac 418
Query: 301 aataatgaccgatcaatggacactctacaaagggggaggagactaaggatagctatttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aataatgaccgatcaatggacactctacaaagggggaggagactaaggatagctatttgg 358
Query: 361 gtggcttgatagtttctatttgctttctggctttgattttacagttgggaaaaatgtaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gtggcttgatagtttctatttgctttctggctttgattttacagttgggaaaaatgtaag 298
Query: 421 tgttattacatggcaatgaggttgctatggtaactccttattgtttaatagaagaggagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgttattacatggcaatgaggttgctatggtaactccttattgtttaatagaagaggagc 238
Query: 481 taaatcttagatacattactgaaagaaaaattaatgc 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 taaatcttagatacattactgaaagaaaaattaatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
