Query= MSMg01no339_h02.b1 MSMg01no339_h02.b1 CHROMAT_FILE:
MSMg01no339_h02.b1 PHD_FILE: MSMg01no339_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:16 2005
(452 letters)
>mm_chr4_44672064_44672915
Length = 852
Score = 777 bits (402), Expect = 0.0
Identities = 438/454 (96%), Gaps = 7/454 (1%)
Strand = Plus / Plus
Query: 6 gaattccagggtagtctgttctacagaggagttccagaacagccagggctacccagagaa 65
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaggggagtctgttctacagaggagttccagaacagccagggctacccagagaa 265
Query: 66 accttgtctcagaaaaacaaaaggcaaacacaaaaagaaagcaagtctccacccccagtg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accttgtctcagaaaaacaaaaggcaaacacaaaaagaaagcaagtctccacccccagtg 325
Query: 126 catcccttaactccttcctagttttgttatcctgctcaaccatcaacaagcacgcgtgca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 catcccttaactccttcctagttttgttatcctgctcaaccatcaacaagcacgcgtgca 385
Query: 186 c-------agcctgggtttcatgcctagctctggggggaacaagcatttaacaatgcaac 238
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 cagccggtagcctgggtttcatgcctagctctgaggggaacaagcatttaacaatgcaac 445
Query: 239 atctgtctttcttactttttatttgttgtttctccctgtttattggaatgccactcttgt 298
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 446 atctgtctttcttagtttttatttgtcgtttctccctgtttattggaatgccactcttgt 505
Query: 299 gtgagagaacttctgtctgcctcatccttttgccgtgtccctgtcacctagatctagaac 358
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgcgagtacttctgtctgcctcatccttttgccgtgtccctgtcacctagatctagaac 565
Query: 359 aaaggtcagcacagagcaggcgcacactacacacctgtagggtgaataaacacgagtgga 418
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 aaaggtcatcacagagcaggcgcacactacacacctgtagggtgaataaacaagagtgga 625
Query: 419 tataaacaacaaggcggggagggatgggggggga 452
|||||||||||||||||||| |||||||||||||
Sbjct: 626 tataaacaacaaggcggggaaggatgggggggga 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_h02.g1 MSMg01no339_h02.g1 CHROMAT_FILE:
MSMg01no339_h02.g1 PHD_FILE: MSMg01no339_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:16 2005
(567 letters)
>mm_chr4_44856446_44857412
Length = 967
Score = 1087 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 1 atttatggagttcaaatgtaatttcatgcttttgtttaaacatatgtaaatcttttaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 atttatggagttcaaatgtaatttcatgcttttgtttaaacatatgtaaatcttttaatt 707
Query: 61 tgaaagcaattcttaatagataaaattagtatgtaaatgtaaactgtaaatataaaatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgaaagcaattcttaatagataaaattagtatgtaaatgtaaactgtaaatataaaatac 647
Query: 121 ataatttgaaagaactggaggcagtaggctctagctttccattaatatctctgcaacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ataatttgaaagaactggaggcagtaggctctagctttccattaatatctctgcaacaat 587
Query: 181 tagaacatgtttttaataatagctttactctgtcatcctgtcatcttggctttattgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tagaacatgtttttaataatagctttactctgtcatcctgtcatcttggctttattgtat 527
Query: 241 taatattacaaaatgtgctatcaggaggaaataaaaaagcaatgtctatacagaatacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 taatattacaaaatgtgctatcaggaggaaataaaaaagcaatgtctatacagaatacaa 467
Query: 301 aatttgatgtaagtacttggtagcatgaagcagtaacggtataaatatagtatgagaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aatttgatgtaagtacttggtagcatgaagcagtaacggtataaatatagtatgagaaat 407
Query: 361 atagtgttcaagattacctaagcgagcactgccatgtaatgtcccattgagagcatgtcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atagtgttcaagattacctaagcgagcactgccatgtaatgtcccattgagagcatgtcc 347
Query: 421 caagtactatgagaagcaagggcatacttcatatacagagcacagaaattaaataactgg 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 346 caagtactatgagaagcaagggcatacttcatatacaaagcacagaaattaaataactgg 287
Query: 481 cacacaatggatccatgcacaaccctctgggcaaggccagacaacacatatacatttata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cacacaatggatccatgcacaaccctctgggcaaggccagacaacacatatacatttata 227
Query: 541 tcttccatacaaacttaaaaaaaaaa 566
||||||||||||||||||||||||||
Sbjct: 226 tcttccatacaaacttaaaaaaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
