CCGCGGGGGTCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTGCATCTTGCACCATCAATCATCCAATACCAATG
TGTCTCACTGATGATGACTAATTTGAGTCACTGGATCAAGGTGATATAGA
GCAATTTTCCTCACTTTCGTCTGTTGAATTTTCACTCACCAGTTTCATAC
CCACTGCTGGTTCTTTCCTGAGTCAACACTCAGGAAGATGATTTTCAGAG
TGGTTTGTTTTTTTGGTTGTTTTGTTTTATTTTGTTTTGTTTTTTGCTCT
GCATTCCTTCTGTGTCTTGGTTGTAAGGTAAGGTTCCTGTCTGTAACAGT
CACTTATCAAGTCTAGGGTAACATTTTATCACTAAGCCTCATCCTTAGCC
AAAATATAATAGAATTAAAAGCAAGGAGTTGGGTACTCAAAGAACTCACT
GGAAGAGCCAGAGTTACGTGGGCTTTCAGAAGTATTGAGCATCATGACCA
ACATATTGGAATGATAAATTAAGAGGACTCTCCTAGATTTAATGAGTTAA
AACTGTACATTCCAGTATATGGAATCACCAATACAGAGTCAAGAAAGTTA
CTGTTACCCATACACAAGTACCTCCTCCAACCACCATCTCATCCAAGCAA
ATAACCAGAACGAGGTCTCCCGACTCCTCAAGCTCTCGATAAACTTAGTC
CACAGCTCATTCCACCAACAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGCACCACTACCATCCTACTCCCTGTACTGGGGATTAAACC
CAGGAGCATGAGCATGCTAGACAAGTGCTCTGGCCACCAAACTACCTCTC
TCACCATTCATTTTTTTTTAATTTTTAAAAAAGATTAATTAAAAAAATTT
TTTTTCTGTGTATGTGTGTTTTAATTGCATATAAGTATGTACACCCTGTA
TATGCCTAGTAACCAAGGAGGCTAGAAGAGTGGGGAGATCCCCTGGGACT
GGAGTTACAGGCAGTAGAGTGGGGAATCAAAGCTAGGTAGGCCCTCTGAA
AGAGCAGCCAGCGCTCTTAACCACTGAGCCATCTCTTCAGCCTACACCAT
TTTTTTTTTTTTTGAGACTTGATCTCACCATAGGACTCAGACTAGCCTTG
AACTCCCAATTCTTCTGGCCTCTGCTTCCCAAGTGTTGGAACTAAAGGCA
TATCCCAACATACCTGGCTTTAATTGAGTTAAAAAATTATAAATGCATCT
CTGCACTTCATTGTAAGGGGAGTGGCCAGGTATAAATGCAATGAAATTTT
TAGGATGAAGATTTGAATGGAGAATAATTCTCACAAATGTTGAGTTTAAG
TGTGAGATTTTAAGAATGATTCAGATCAGTTAGCCCTTATAGAATN

Query= MSMg01no339_i02.b1 MSMg01no339_i02.b1 CHROMAT_FILE:
MSMg01no339_i02.b1 PHD_FILE: MSMg01no339_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:21 2005
         (621 letters)



>mm_chr4_100421277_100422296
          Length = 1020

 Score = 1156 bits (598), Expect = 0.0
 Identities = 613/618 (99%), Gaps = 1/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgcatcttgcaccatcaatcatccaataccaatgtgtctcactgatgatgac 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgcatcatg-accatcaatcatccaataccaatgtgtctcactgatgatgac 262

                                                                       
Query: 64  taatttgagtcactggatcaaggtgatatagagcaattttcctcactttcgtctgttgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taatttgagtcactggatcaaggtgatatagagcaattttcctcactttcgtctgttgaa 322

                                                                       
Query: 124 ttttcactcaccagtttcatacccactgctggttctttcctgagtcaacactcaggaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttcactcaccagtttcatacccactgctggttctttcctgagtcaacactcaggaaga 382

                                                                       
Query: 184 tgattttcagagtggtttgtttttttggttgttttgttttattttgttttgttttttgct 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgattttcagagtagtttgtttttttggttgttttgttttattttgttttgttttttgct 442

                                                                       
Query: 244 ctgcattccttctgtgtcttggttgtaaggtaaggttcctgtctgtaacagtcacttatc 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 ctgcattccttctgtgtcttggttgtaaggcaaggttcctgtctgtaacagtcacttatc 502

                                                                       
Query: 304 aagtctagggtaacattttatcactaagcctcatccttagccaaaatataatagaattaa 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 503 aagtctagggtaacattttatcactaagcctcatccttagccaaaatataatggaattaa 562

                                                                       
Query: 364 aagcaaggagttgggtactcaaagaactcactggaagagccagagttacgtgggctttca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagcaaggagttgggtactcaaagaactcactggaagagccagagttacgtgggctttca 622

                                                                       
Query: 424 gaagtattgagcatcatgaccaacatattggaatgataaattaagaggactctcctagat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaagtattgagcatcatgaccaacatattggaatgataaattaagaggactctcctagat 682

                                                                       
Query: 484 ttaatgagttaaaactgtacattccagtatatggaatcaccaatacagagtcaagaaagt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttaatgagttaaaactgtacattccagtatatggaatcaccaatacagagtcaagaaagt 742

                                                                       
Query: 544 tactgttacccatacacaagtacctcctccaaccaccatctcatccaagcaaataaccag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tactgttacccatacacaagtacctcctccaaccaccatctcatccaagcaaataaccag 802

                             
Query: 604 aacgaggtctcccgactc 621
           ||||||||||||||||||
Sbjct: 803 aacgaggtctcccgactc 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space:   617110
Effective search space used:   617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)