Query= MSMg01no339_m05.b1 MSMg01no339_m05.b1 CHROMAT_FILE:
MSMg01no339_m05.b1 PHD_FILE: MSMg01no339_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:40 2005
(568 letters)
>mm_chr4_32040189_32041156
Length = 968
Score = 899 bits (465), Expect = 0.0
Identities = 519/565 (91%), Gaps = 44/565 (7%)
Strand = Plus / Plus
Query: 8 ggaattctttaaacttccattccacaggccactggcttagggcatcacctggggaacacg 67
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattctttaaactttcattccacaggccactggcttagggcatcacctggggaacacg 267
Query: 68 cattccaatggcctgcctatgttatatgtagaaagtggattttggtaacacaaagagagc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cattccaatggcctgcctatgttatatgtagaaagtggattttggtaacacaaagagagc 327
Query: 128 actcataaatatatagttgatatctctgtgtgttagggcttccaatgccgtgatgaaaaa 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 actcataaatatatagttgatatctctgtgtgttagggcttccaatgccgtgatgaaaaa 387
Query: 188 acatggctgggctggagagatggctcagtgggtaggagcacagactgctcttccgaaggt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acatggctgggctggagagatggctcagtgggtaggagcacagactgctcttccgaaggt 447
Query: 248 tgagagttcaatttccagcaaccacatggtggctcacaaccacccgtaatgagatctgac 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgagagttcaatttccagcaaccacatggtggctcacaaccacccgtaatgagatctgac 507
Query: 308 gccctctactggtgcatctggagacagctacagtgtatgcacatataataaataaataaa 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gccctctactggtgcatctggagacagctacagtgtatgcacatataataaataaataaa 567
Query: 368 taaataaataaataaataaataaataaat----gtatgtttgaaagaaagaaagaaagaa 423
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 568 taaataaataaataaataaataaataaataaatgtatgtttgaaagaaagaaagaaagaa 627
Query: 424 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagatagaaagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag---------- 677
Query: 484 agaaagaaagaaagaaagaaagaaagaaagttcctaagcaatctgggctgcaaagagaaa 543
|||| |||||||||||||||||||||||||
Sbjct: 678 ------------------------------ttccaaagcaatctgggctgcaaagagaaa 707
Query: 544 ccatgttttaaaaaaaaaaaaagaa 568
|||||||||||||||||||||||||
Sbjct: 708 ccatgttttaaaaaaaaaaaaagaa 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 178
Number of extensions: 67
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_m05.g1 MSMg01no339_m05.g1 CHROMAT_FILE:
MSMg01no339_m05.g1 PHD_FILE: MSMg01no339_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:41 2005
(521 letters)
>mm_chr4_32266641_32267561
Length = 921
Score = 1007 bits (521), Expect = 0.0
Identities = 521/521 (100%)
Strand = Plus / Minus
Query: 1 ccgagcctgtctggagacatgggtgggctccgctcccctgacatctttccccagaagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccgagcctgtctggagacatgggtgggctccgctcccctgacatctttccccagaagccc 662
Query: 61 ttctgttcctctcccctttcccctcctggattctttagcaaaaaggcttacagcttgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttctgttcctctcccctttcccctcctggattctttagcaaaaaggcttacagcttgaga 602
Query: 121 gaaaagtttcgagttcacacttgccgcttcccctggtgttaagggcacatggagccgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaaaagtttcgagttcacacttgccgcttcccctggtgttaagggcacatggagccgtgc 542
Query: 181 ttaccgcatgagaaggcttaatgaaacttagcgttttggttcctgacaactggccagttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttaccgcatgagaaggcttaatgaaacttagcgttttggttcctgacaactggccagttc 482
Query: 241 acatgccactgactcccaaaggattcatagtaagtctttaacttgacccttagaaagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acatgccactgactcccaaaggattcatagtaagtctttaacttgacccttagaaagcat 422
Query: 301 ttaagaaacttcagggaacccatcaaaacaaaacccacaagcagacgctgagctgtgagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttaagaaacttcagggaacccatcaaaacaaaacccacaagcagacgctgagctgtgagc 362
Query: 361 tgtgagcagcaggcatgcactggtcaaggaattagattactcaaggtagtgactcattca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtgagcagcaggcatgcactggtcaaggaattagattactcaaggtagtgactcattca 302
Query: 421 gcaactatgtagtgtttgtggtcggggaaacctttgccagaacatgactaaaatctattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcaactatgtagtgtttgtggtcggggaaacctttgccagaacatgactaaaatctattg 242
Query: 481 gcagcttcttaaaaggaatcatgacagggcctaaaccaatg 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcagcttcttaaaaggaatcatgacagggcctaaaccaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
