Query= MSMg01no340_d15.b1 MSMg01no340_d15.b1 CHROMAT_FILE:
MSMg01no340_d15.b1 PHD_FILE: MSMg01no340_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:13 2005
(664 letters)
>mm_chr4_77592125_77593188
Length = 1064
Score = 1216 bits (629), Expect = 0.0
Identities = 653/661 (98%)
Strand = Plus / Minus
Query: 4 ggaattcttaatatctcacaggtattagagtacaaaatctaggagacactagcatctctt 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ggaattcttaatatcacaaaggtattagagtacaaaatctaggagacactagcatctctt 805
Query: 64 aacctgctattacttcttggataatttatgcccctcgatcctagcctgaaaagttaaaga 123
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 804 aacctgctattacttcttggataatttatgtccctcgatcctagcctgaaaagttaaagg 745
Query: 124 ataagagtaccagatcagattgaatgcgattcagctattcagcaacctgtaatcacttca 183
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 744 ataagagtaccagatcagattgaatgcgattctggtattcagcaacctgtaatcacttca 685
Query: 184 tggctctaacacaactttttttccccacttagtggtgaataagtggttctgtttgaagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggctctaacacaactttttttccccacttagtggtgaataagtggttctgtttgaagaa 625
Query: 244 atccatccccatttctatagagaaagttgctgtgtgactcttaatctccattaaagtgta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atccatccccatttctatagagaaagttgctgtgtgactcttaatctccattaaagtgta 565
Query: 304 attgggtactaaaagaaacagattggttattgttgaccgtgtgataggagctgcatagag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attgggtactaaaagaaacagattggttattgttgaccgtgtgataggagctgcatagag 505
Query: 364 ccaggaaaagacacgattcattgattttaatcgtgttcaatactcagtattcacaaaaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaggaaaagacacgattcattgattttaatcgtgttcaatactcagtattcacaaaaaa 445
Query: 424 gaaggaccacagtaatttagccaatcactgatagcagaagattcaaacaaatttgcaata 483
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaggaccacagtaattcagccaatcactgatagcagaagattcaaacaaatttgcaata 385
Query: 484 gagttggtaacgcaatttttttctttaaaccatttatcacaactgtctttaatgaatagt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagttggtaacgcaatttttttctttaaaccatttatcacaactgtctttaatgaatagt 325
Query: 544 gtctcatatatcaaaaatttagaactgtaaaatgaatatgttttatatttagtgacttat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctcatatatcaaaaatttagaactgtaaaatgaatatgttttatatttagtgacttat 265
Query: 604 ttctttgtcatcagcttaataagcctccctctatgtatccatactcaaatgtcatgattc 663
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 ttctttgtcatcagcttaataagcctccctctatgtatccatactctaatgtcatgattc 205
Query: 664 t 664
|
Sbjct: 204 t 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_d15.g1 MSMg01no340_d15.g1 CHROMAT_FILE:
MSMg01no340_d15.g1 PHD_FILE: MSMg01no340_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:13 2005
(639 letters)
>mm_chr4_77528682_77529720
Length = 1039
Score = 1164 bits (602), Expect = 0.0
Identities = 632/646 (97%), Gaps = 11/646 (1%)
Strand = Plus / Plus
Query: 1 ataagcatggttacatgattactgagaatcaaaaacaggtctgtactgttaaagccaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ataagcatggttacatgattactgagaatcaaaaacaggtctgtactgttaaagccaact 257
Query: 61 aagtgctttaccatctgtgatgcctctttggcctatggggtataatgtttagcttctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aagtgctttaccatctgtgatgcctctttggcctatggggtataatgtttagcttctaaa 317
Query: 121 gtccacagtattgtgtgggataaatatacacatattcatagataggtaaatggatacatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtccacagtattgtgtgggataaatatacacatattcatagataggtaaatggatacatt 377
Query: 181 catacatacagacagacagaca----gacagacagacagagatatacatgctacatactt 236
|||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 378 catacatacatacatacagacatacagacagacagacagagatatacatgctacatactt 437
Query: 237 attctatttggtattttattgtttgcatatttaattaaatatatacaatttatttcattg 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 438 attctatttggtattttattgtttgcatatttaattaaatatatacaatttatttcatgg 497
Query: 297 ttgaaagataatatcgtatatgttccattttccttttttttttcc--tttttttaaaaaa 354
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 498 ttgaaagataatatcgtatatgttccattttccttttttt---cccttttttttaaaaaa 554
Query: 355 ttaggtgttttgttcatttatatttcaagtcccccatacctct-cccctactcccctacc 413
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 555 ttaggtgttttgttcatttatatttcaagtcccccatacc-cttcccctactcccctacc 613
Query: 414 tacccactccaatttcttggccctggtgattttcacctaagctatttatctaccatttca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tacccactccaatttcttggccctggtgattttcacctaagctatttatctaccatttca 673
Query: 474 atagaaattgaaaagaatttctattctacagcataatgacaaattacaaaggaagcctac 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atagaaattgaaaagaatttctattctacagcataatgacaaattacaaaggaagcctac 733
Query: 534 cactactagtataaggaagaaaagtatggtcaataatttttgttaaacaaaagtaaaacc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cactactagtataaggaagaaaagtatggtcaataatttttgttaaacaaaagtaaaacc 793
Query: 594 aaaccaaaacagtatctgtctaccagattgactaaaggctacactt 639
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aaaccaaaacagtatctgtctaccagattgactaaaggctacactt 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
