XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGTCCTGTCTTCCTCTGATAATAAACTGTAATGTGGAAGTGGAAGCT
GAACAAGCCTTTTCCTCTCCAACTTGCTTTTGCTCATGGTGTTTCATTGC
AGTAATAGAAACCCTAACTAAGATACCTCACGACTTTGAGCTTCCTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCCTCTTCTTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTCCTTCTTAGATCTCTTGAAACAGTAATACNACATTAAAA
GTAACTTTAATAATATGTCTACTTACCAAAGTATTATTACTGTAATTCTC
CCTGTAAGGACCATCCTACTTGCATGTTTTTGGTCCCTTAAAAATGAAAG
GGCTAGGATCCCTTCTCATGAAATGATTTCTTTGAGGTCATAAAAAATTG
GTTGTAACTTCAAACTACTCGGGTGCCAATATGGCTTTAGTAATGCCTGT
TTTTTTAAAATTAACGTTTTGCCGGGTGCTTCCTTGTTCAAATGTTAAAT
GGATAAAATGTGTTAACTTTGTCGGTTGTAAAATAT

CCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCTAAAATCATTTGTTTGCTATG
TAGGAAACTTTATATACCTAATATTTCCATTTCAAATGCTGAGTTTACCT
ATAAACTACAAGCTCAGTGGTAAAGCACAGATCCAGCACGTGCTGTGGTT
TGAACAAAAAATGACCCCAGGGTCTGGCGGTGCAGCCTTGTTGGAGGAAG
TACATCACTGGGGCAGGCTTTGAAATGAAAAGGCCTCCTTTACCTCCAGT
TTGCTCTCACTACTTCATACTTGGGGTTCAAGATGTGAGGTCTCAGCTAT
AGTGCATTCTCCATAATTATTACCTGGTCCAAACTATCAGCCACGCGGTA
AGAGATGCCCTGCTGGAGAGGGAAGACTCGATGTTATAAGGTAGGGTTAA
AACAAAGCCACTTCAAAATAATGATAATGTCGCTGCTGTGTAGTCTGGGA
TTCCTAAAATGCACAACAGCCACAAAAATGTCCTCATTCTTCCTTCAAGC
ATAAAAACCAAAGCGGCCCTGTAACAGCGCAGCGGAATCACCGGAGCAGC
GTGAAGGGACGTGGAGGGGTGTGAGCGTCGGAGTGTCTGATCAGCAACAC
TGTGAGCGCTGTGCTTGTTCTAGTTGAAGCTGTTTCTGCATGCTGACTAC
TCCAGTTCACTGGTGACTAGCAACAGCAGGAATGTGAG

Query= MSMg01no340_e05.g1 MSMg01no340_e05.g1 CHROMAT_FILE:
MSMg01no340_e05.g1 PHD_FILE: MSMg01no340_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:15 2005
         (630 letters)



>mm_chr4_32391912_32392942
          Length = 1031

 Score =  988 bits (511), Expect = 0.0
 Identities = 535/543 (98%), Gaps = 1/543 (0%)
 Strand = Plus / Minus

                                                                        
Query: 89   tcagtggtaaagcacagatccagcacgtgctgtggtttgaacaaaaaatgaccccagggt 148
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1031 tcagtggtaaagcacagatccagcgcgtgctgtggtttgaacaaaaaatgaccccagggt 972

                                                                        
Query: 149  ctggcggtgcagccttgttggaggaagtacatcactggggcaggctttgaaatgaaaagg 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  ctggcggtgcagccttgttggaggaagtacatcactggggcaggctttgaaatgaaaagg 912

                                                                        
Query: 209  cctcctttacctccagtttgctctcactacttcatacttggggttcaagatgtgaggtct 268
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 911  cctcctttacctccagtttgctctcactacttcatgcttggggttcaagatgtgaggtct 852

                                                                        
Query: 269  cagctatagtgcattctccataattattacctggtccaaactatcagccacgcggtaaga 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  cagctatagtgcattctccataattattacctggtccaaactatcagccacgcggtaaga 792

                                                                        
Query: 329  gatgccctgctggagagggaagactcgatgttataaggtagggttaaaacaaagccactt 388
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 791  gatgccctgctggagagggaagactcgatgttataaagtagggttaaaacaaagccactt 732

                                                                        
Query: 389  caaaataatgataatgtcgctgctgtgtagtctgggattcctaaaatgcacaacagccac 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  caaaataatgataatgtcgctgctgtgtagtctgggattcctaaaatgcacaacagccac 672

                                                                        
Query: 449  aaaaatgtcctcattcttccttcaagcataaaaac-caaagcggccctgtaacagcgcag 507
            ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct: 671  aaaaatgtcctcattcttccttcaagcataataactcaaagcggccctgtaagagcgcag 612

                                                                        
Query: 508  cggaatcaccggagcagcgtgaagggacgtggaggggtgtgagcgtcggagtgtctgatc 567
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 611  cggaatcaccggagcagcgtgaagggacgtggaggggtgtgagcgtcagagcgtctgatc 552

                                                                        
Query: 568  agcaacactgtgagcgctgtgcttgttctagttgaagctgtttctgcatgctgactactc 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551  agcaacactgtgagcgctgtgcttgttctagttgaagctgtttctgcatgctgactactc 492

               
Query: 628  cag 630
            |||
Sbjct: 491  cag 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space:   633020
Effective search space used:   633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)