Query= MSMg01no340_j12.b1 MSMg01no340_j12.b1 CHROMAT_FILE:
MSMg01no340_j12.b1 PHD_FILE: MSMg01no340_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:38 2005
(148 letters)
>mm_chr4_58226105_58226652
Length = 548
Score = 265 bits (137), Expect = 8e-76
Identities = 143/145 (98%)
Strand = Plus / Minus
Query: 4 ggaattcagcagggtccacttgttaatgatcatcacccgtgggcttgttgagtatttaca 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaattcagcagggcccacttgttaatgatcatcacccgtgggcttgttgagtatttaca 289
Query: 64 tccctcaggagaggaaaggagggtcatgagaccctcacctatgtaccacccacttgtttg 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 288 tccctcaggagaggaaaggagggtcatgagaccctcacctgtgtaccacccacttgtttg 229
Query: 124 caactctgccataatggcacatggc 148
|||||||||||||||||||||||||
Sbjct: 228 caactctgccataatggcacatggc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space: 75600
Effective search space used: 75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no340_j12.g1 MSMg01no340_j12.g1 CHROMAT_FILE:
MSMg01no340_j12.g1 PHD_FILE: MSMg01no340_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:38 2005
(576 letters)
>mm_chr4_58054283_58055255
Length = 973
Score = 1098 bits (568), Expect = 0.0
Identities = 573/576 (99%), Gaps = 3/576 (0%)
Strand = Plus / Plus
Query: 1 caaacctttgaatccattcagagtaaaagaacataaattttaaaccttttaagctatcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacctttgaatccattcagagtaaaagaacataaattttaaaccttttaagctatcta 260
Query: 61 aagcgacagaaggcacactgtacttggtggtgtatttcatcagtaggtccttggagaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcgacagaaggcacactgtacttggtggtgtatttcatcagtaggtccttggagaacc 320
Query: 121 aagtgtctcgatcaatggctttctcttgcttcctttctggtaccacttactctttttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgtctcgatcaatggctttctcttgcttcctttctggtaccacttactctttttatt 380
Query: 181 aatcatggcttttaaactttattttgtatttttgtgattataaatgatgaagatcaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcatggcttttaaactttattttgtatttttgtgattataaatgatgaagatcaacat 440
Query: 241 gggatgaagctgtcagacaaactgaatggcaagcatatatggatgagaagtgggaaggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatgaagctgtcagacaaactgaatggcaagcatatatggatgagaagtgggaaggat 500
Query: 301 gtcaggtgatcgagccaatggctaagagaccatagggacggcaagatccttcttgtctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaggtgatcgagccaatggctaagagaccatagggacggcaagatccttcttgtctgt 560
Query: 361 cccgcatatctctgcagtgctacactgtacgctgtgctttgtgggagaaggtctcccaga 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 cccgcatatctctgcagtgctacactgtacgctgtgctttgtgggag---gtctcccaga 617
Query: 421 ggatagagccaatgcaattatatatttcctatattaaaatgaaatctagggtttggctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggatagagccaatgcaattatatatttcctatattaaaatgaaatctagggtttggctat 677
Query: 481 attttctgaagtctggaaagtctttattctgaaataggtataatgatgaaagtagatgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 attttctgaagtctggaaagtctttattctgaaataggtataatgatgaaagtagatgaa 737
Query: 541 gtcagactgtggggtagcttgactgtttcctgagca 576
||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtcagactgtggggtagcttgactgtttcctgagca 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 973
Length adjustment: 10
Effective length of query: 566
Effective length of database: 963
Effective search space: 545058
Effective search space used: 545058
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
