Query= MSMg01no340_k11.b1 MSMg01no340_k11.b1 CHROMAT_FILE:
MSMg01no340_k11.b1 PHD_FILE: MSMg01no340_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:42 2005
(468 letters)
>mm_chr4_118980692_118981559
Length = 868
Score = 832 bits (430), Expect = 0.0
Identities = 454/464 (97%), Gaps = 5/464 (1%)
Strand = Plus / Plus
Query: 5 gaattcattctaatgtccagatggtccttaatctcgtcagactcttgtccatctttccct 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctaaagtccagatggtccttaatctcgtcagactcttgtccatctttccct 264
Query: 65 ggctgggattatagactttcagatgtgtagtaccatattaggctaaaatttaaaaaataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggctgggattatagactttcagatgtgtagtaccatattaggctaaaatttaaaaaataa 324
Query: 125 ataaagaaataattttttttttcctgtgtagttctggctgtcctggaactcactctgtag 184
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaa----taattttttttt-cctgtgtagttctggctgtcctggaactcactctgtag 379
Query: 185 accaggctggcctcgaactcagagacctgccaacttttgcctcctgagtgctgggattgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accaggctggcctcgaactcagagacctgccaacttttgcctcctgagtgctgggattgg 439
Query: 245 aggcatgctccacaatgtctagttagatgtggtaatattttatcttagcaataaggaggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggcatgctccacaatgtctagttagatgtggtaatattttatcttagcaataaggaggc 499
Query: 305 taagacaaagaactaggtatgggtggagagatggttcagtgcttagtggcacttccattc 364
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 taaggcaaagaactaggtatgggtggagagatggttcagtggttagtggcacttccattc 559
Query: 365 ttccagaggaaccagtactcacactcagcagccgactactcctaggataaccactaagga 424
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 ttccagaggaaccagtactcacactcagcagccgactactcctaggataagcactaagga 619
Query: 425 ggtacgtgaactcacacgcacacacccctacccagactcacata 468
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 ggtacgtgaactcacacgcacacaccccaacccagactcacata 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_k11.g1 MSMg01no340_k11.g1 CHROMAT_FILE:
MSMg01no340_k11.g1 PHD_FILE: MSMg01no340_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:42 2005
(560 letters)
>mm_chr4_119156739_119157698
Length = 960
Score = 990 bits (512), Expect = 0.0
Identities = 549/562 (97%), Gaps = 2/562 (0%)
Strand = Plus / Minus
Query: 1 ctcacagacttgcctacaggccagtctgatggaggta--ttttttttcgatcgaggttcc 58
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 855 ctcacagacttgcctacaggccagtctgatggaggtattttttttttcgatcgaggttcc 796
Query: 59 ctttccagatgactgtagcttatgtcgggctgataaattcttagttgacacagaaaggaa 118
||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 795 ctttccagatgactgtagcttgtgtcgggctgataaattcttagttggcaccgaaaggaa 736
Query: 119 ggctcaccagaagaggctgacaagggagtttagagcccattggtgtggtcggagaggata 178
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggctcatcaggagaggctgacaagggagtttagagcccattggtgtggtcggagaggata 676
Query: 179 caacaaagatgagaaggaactgacagttggacagatgaagaaactgtaaaggctgggaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 caacaaagatgagaaggaactgacagttggacagatgaagaaactgtaaaggctgggaaa 616
Query: 239 ggagttagtggttgagtgcttgcccagcacgtggggttcacacagctgaggtggtagggg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggagttagtggttgagtgcttgcccagcacgtggggttcacacagctgaggtggtagggg 556
Query: 299 tgagcagccatggagtctggagtccagggaaacgatatgggcctcgagtggctgaatgaa 358
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 555 tgggcagccatggagtctggagtccagggaaacgatatgagcctcgagtggctgaatgaa 496
Query: 359 gggcttcataagacttgtttgctggtttttaaataggccatgttggtgaggtgctgatgt 418
|| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct: 495 ggacttcataagacttgtttcctggtttttaaaaaggccatgttgatgaggtgctgatgt 436
Query: 419 tgataggtgatgggaaggtttgccaagttctgggactcttgcatttcacagaaggggaga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgataggtgatgggaaggtttgccaagttctgggactcttgcatttcacagaaggggaga 376
Query: 479 taggtccagagacacaacaaacagttcagccaacactctggggggaaggccaggcccatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taggtccagagacacaacaaacagttcagccaacactctggggggaaggccaggcccatt 316
Query: 539 ctgccttcatgacaatttcttg 560
||||||||||||||||||||||
Sbjct: 315 ctgccttcatgacaatttcttg 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
