BAC Information

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BAC

Clone NameMSMg01-341C14
Chromosome4 (Build37)
Map Location 49,800,317 - 49,992,900
singlet/doubletdoublet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663, LOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341C14.T7 (MSMg01no341_c14.b1)MSMg01-341C14.TJ (MSMg01no341_c14.g1)
ACCAG455026AG455027
length752753
length of high quality
(start - end)		571 (42 - 612)558 (72 - 629)
definitionCHROMAT_FILE: MSMg01no341_c14.b1 PHD_FILE: MSMg01no341_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:20 2005CHROMAT_FILE: MSMg01no341_c14.g1 PHD_FILE: MSMg01no341_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,800,317 - 49,800,884)(49,992,402 - 49,992,900)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGCATTATCCAGAAATGAAGTTCAGAAGTTGTTCAAGGAATAGATTAC
TCATTCTACTCAGCAAAGTAGAGCTGGATGGTAAAGCTTGGCTTAGTGGC
ATAGACCTGTAATCCTAGCTGCTTGCGAGGACTAGGTTAGGAGAATCACA
AGTTCAAAGTCACTCTGGGTTATAGGGCAAGTTTAAGGCTACATTGGTCA
TTTTATCAAGACCCTTTCCACTGACATCCATTAGGCACACGAAATGCAAA
CTCCTTAGCTGGCATAAAAGCTGGCATATGTGGTATGCTGCGAATACTTT
CCTAGAGACATCCCAGATCTTCAAATGCAACTCATGCTCCAATTATGTTA
CATTTTGTCTTCAGGTCTTAACAAATTCACACGTTTCATTTTCTGTGCTT
AAGACTTAGCTCCAAATGTGAAAACTTGTATTAAAACATACCACCAAATC
TCTGAGAATGTTAATGGATTTTTTTCCCCATGTATTTTAAACAGTTCACG
TCCTTCCAAGCTTAGTGGTACAATCCTGATCCCAGCACACTGGAAACAGA
GGGCATACCATTGTGAGTTCTAAGCCAGACTGGACTACATAGCAAGACTT
TGTCTCATGTGGCCGGGGAATGGTGCTGAGGTTTGTTTGCGCTTTTGTTA
TCTATGCTAATGGCAAGAGCGAGCCCAACCTCTCGAACTGGCGGTTTCAA
TA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTGATGATGTGACTTGCTAAAAAATTT
ATTTCTAACTTTTACCATCATGAAATTTCCCTGAACTAATTAGCCAAGTC
CAGAGATAAGTTGATCCTGTCTAGATCCTCCTGTGCAAATTTAGCTTACA
TTTCTCAACTCTATGCCCTTTACCTAACCTCAGGCAAATGGGTTCTATCT
TGATGTAGGGAAGTCCCTAAATCATTGGCTGAGATGAGATATATTAGTCT
CTATCCACTATCTACAGACTATTATCTCAGCTACACTGTAGCTGGTAACA
TATAGGTACCACTTAAAATATATGGGCTCTATTCTAAAAACTTCACATAA
ATTAAATCATTTTTATGATCCACAAATAGGGAGTATGATTACTCTTGAGA
TTTTAGAAAAATATGATGAATAGAAAAGGTATAAGACATCTCCAAGGTCC
CTCTGCTAGTAAATAGCCAAGCTGGGATCCTAAGGGAGACTCTAAAGCAT
TATTCTTCCTCTTATCCACATACTCACCAAGAAAACAATGACTTCTCTAT
CTCAGGAGTATCGGGGGCAGGGGGAGCCAAAGAAAGAAGGGGTTTTCTAA
ACCCTAATTTTTCTCCCAGGTTTCCCTTTATCGAAGCTCTTGTTAATGTT
CCCGTATTAAGGTGGATTCCAAGCCATAACCTATAAAACCCTTGTTCCCG
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_c14.b1 MSMg01no341_c14.b1 CHROMAT_FILE:
MSMg01no341_c14.b1 PHD_FILE: MSMg01no341_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:20 2005
         (571 letters)



>mm_chr4_49800114_49801084
          Length = 971

 Score = 1006 bits (520), Expect = 0.0
 Identities = 556/568 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgcattatccagaaatgaagttcagaagttgttcaaggaatagattactcat 63
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 ggaattcttgcaggatacagaaatgaagttcagaagttgttcaaggaatagattattcat 263

                                                                       
Query: 64  tctactcagcaaagtagagctggatggtaaagcttggcttagtggcatagacctgtaatc 123
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 tctactcggcaaagtagagctggatggtaaagcttggcctagtggcatagacctgtaatc 323

                                                                       
Query: 124 ctagctgcttgcgaggactaggttaggagaatcacaagttcaaagtcactctgggttata 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagctgctttcgaggactaggttaggagaatcacaagttcaaagtcactctgggttata 383

                                                                       
Query: 184 gggcaagtttaaggctacattggtcattttatcaagaccctttccactgacatccattag 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggaaagtttaaggctacattggtcattttatcaagaccctttccactgacatccattag 443

                                                                       
Query: 244 gcacacgaaatgcaaactccttagctggcataaaagctggcatatgtggtatgctgcgaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 444 gcacacgaaatgcaaactccttagctggcataaaagctggcatatgtggtatgctgtgag 503

                                                                       
Query: 304 tactttcctagagacatcccagatcttcaaatgcaactcatgctccaattatgttacatt 363
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 tactttcctagagacatcccagatcttcaaatgcaattcatgctccaattatgttacatt 563

                                                                       
Query: 364 ttgtcttcaggtcttaacaaattcacacgtttcattttctgtgcttaagacttagctcca 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 ttgtcttcaggtcttaacaaattcacacgtttcattttctgtgcttaagaattagctcca 623

                                                                       
Query: 424 aatgtgaaaacttgtattaaaacataccaccaaatctctgagaatgttaatggatttttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatgtgaaaacttgtattaaaacataccaccaaatctctgagaatgttaatggatttttt 683

                                                                       
Query: 484 tccccatgtattttaaacagttcacgtccttccaagcttagtggtacaatcctgatccca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccccatgtattttaaacagttcacgtccttccaagcttagtggtacaatcctgatccca 743

                                       
Query: 544 gcacactggaaacagagggcataccatt 571
           ||||||||||||||||||||||||||||
Sbjct: 744 gcacactggaaacagagggcataccatt 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_c14.g1 MSMg01no341_c14.g1 CHROMAT_FILE:
MSMg01no341_c14.g1 PHD_FILE: MSMg01no341_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:20 2005
         (558 letters)



>mm_chr4_49992402_49993359
          Length = 958

 Score =  911 bits (471), Expect = 0.0
 Identities = 492/499 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgatgatgtgacttgctaaaaaatttatttctaacttttaccatcatgaaatttccc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 499 atttgatgatgtgacttgctaaaaaattgatttctaacttttaccatcatgaaatttccc 440

                                                                       
Query: 61  tgaactaattagccaagtccagagataagttgatcctgtctagatcctcctgtgcaaatt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 tgaactaattagccaagtccagagatatgttgatcctgtctagatcctcctgtgcaaatt 380

                                                                       
Query: 121 tagcttacatttctcaactctatgccctttacctaacctcaggcaaatgggttctatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagcttacatttctcaactctatgccctttacctaacctcaggcaaatgggttctatctt 320

                                                                       
Query: 181 gatgtagggaagtccctaaatcattggctgagatgagatatattagtctctatccactat 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 319 gatgtagggaagtccctaaatcattggctgaggtgagatatattagtctctatccactat 260

                                                                       
Query: 241 ctacagactattatctcagctacactgtagctggtaacatataggtaccacttaaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 259 ctacagactattatctcagctacactgtagctggtaacatataggtaccacttaaaataa 200

                                                                       
Query: 301 atgggctctattctaaaaacttcacataaattaaatcatttttatgatccacaaataggg 360
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 199 atgggctctattttaaaaacttcacataaattaaatcattttcatgatccacaaataggg 140

                                                                       
Query: 361 agtatgattactcttgagattttagaaaaatatgatgaatagaaaaggtataagacatct 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 agtatgattactattgagattttagaaaaatatgatgaatagaaaaggtataagacatct 80

                                                                       
Query: 421 ccaaggtccctctgctagtaaatagccaagctgggatcctaagggagactctaaagcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ccaaggtccctctgctagtaaatagccaagctgggatcctaagggagactctaaagcatt 20

                              
Query: 481 attcttcctcttatccaca 499
           |||||||||||||||||||
Sbjct: 19  attcttcctcttatccaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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