BAC Information

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BAC

Clone NameMSMg01-341C20
Chromosome4 (Build37)
Map Location 84,929,869 - 85,151,863
singlet/doubletdoublet
Overlap geneSh3gl2
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341C20.T7 (MSMg01no341_c20.b1)MSMg01-341C20.TJ (MSMg01no341_c20.g1)
ACCAG455038AG455039
length765785
length of high quality
(start - end)		438 (39 - 476)442 (69 - 510)
definitionCHROMAT_FILE: MSMg01no341_c20.b1 PHD_FILE: MSMg01no341_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:21 2005CHROMAT_FILE: MSMg01no341_c20.g1 PHD_FILE: MSMg01no341_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,929,869 - 84,930,300)(85,151,425 - 85,151,863)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
AAATATTTCAGTTTTCATAGTGCGGTGCACTTGCCAAGACTTGGTCTCAA
GCCTTCTGGTGCTCCAGGCTTGCCTTCACCTTTTTGTATGATGGAAGGTG
TGGTCAGCTCAACAGAGGGAGTATCAAGCAGACACACTTGCACTGTAACT
GGACCACCTGCTCACTATGTAGACCTTTGTAGTTCATGGCTCTTAAGGGC
AGGCAGTTCCCTCATCTCTTACAGGGCCAGTTGTGGTAAGAATGTATCAA
GAAAAAAAATGTTAAATGACTGGCAAGTAAGTGGGATCTCTAGTTAGGTG
TGACCACCCAGTCTAGGCAGGACTGTAAGCATCAGGAGGTGAGCATGGTC
TTTTTTACTCTGCAGTAAAAAGCTGTGGTTGCTTTGCATTTGCACTTCAG
GCTATCTGTACCTCTGAGTCTGTGCGTTTAACAGCTTTTCCGGGTGGGCT
ATATCCCTCCATACACAGCACATTCTCATACCGTCACTTTCCTGCTGTGT
TACATCTCTAATGCTCATCCCGTATACCCACCAGTGCTGCCTTGCTATTA
TTATCCGACTTGACTCATAATGCGGAAATGTTGTCTGCCCTATTATTCTC
CTCCTTAGCTCCTTTTTCCCTTTCAACTCATTTGCAACGCTTCTTATCGC
CTTTACACTTTTCCCGCGATTTCCCTTCTCGTATCCTTTCTTTTCATTTT
TCCTCCTTTTCACCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGGCAGCTCACAAAGACACACTTAAGGAGAG
GGTGAGAGAAATGATTCAGCTGTTAAGCACACAAGCCTGCAAAGACCTCG
CATTGGGAGGCACACTACCCGGGATAACTGGAGCTCTGGGGGAATCTCAC
AATCTTTTCTAGCCTTCGCCACCATTGTACTCTCATGCATATCCACAAAC
ATATACACATTTTCATTAAATGTTTGACTAAAATACTCTTGGTATTCAAT
GTGTCAAAAGATGCACACCAGTTGAATATACAATACTAAATAGTCACCTT
GGAAAATATACAGACTAGTGACAATATACATACTAAGCATGGTGTATTTA
TGTGTTTAGAAATATACATATGTATGTGTGTATATAACAACACACACATA
TGTACATAACATATTAAAGAATAGGGGGCCATGAAAATTTAAGTGAGAAT
ATTAACATTCTTTGGCCGGCTGTACGATTATGGTGACCGTCCACGTTCCT
TGCTTTTTGTACATGCTCTAATGTTTTTACTTTGGATGGAATTTGGCCTA
TAACCCTCTCCCCATTCCTTCCACCTGTTTCCTCCATCACTCCCTATCCC
GTTATTATACTATTATCACCACGCATTCCCTTGAGCTATTTATCCTTACC
CCTTTTCCTCTCCCCTTTCCTTCCACCTTTTACATACTCAACCCACCTTA
TTTTCTTATTTATCCCGCGCCTTTATATCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_c20.b1 MSMg01no341_c20.b1 CHROMAT_FILE:
MSMg01no341_c20.b1 PHD_FILE: MSMg01no341_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:21 2005
         (438 letters)



>mm_chr4_84929665_84930502
          Length = 838

 Score =  820 bits (424), Expect = 0.0
 Identities = 430/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaaatatttcagttttcatagtgcggtgcacttgccaagacttggtctcaagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaaatatttcagttttcatagtgcggtgcacttgccaagacttggtctcaagc 264

                                                                       
Query: 65  cttctggtgctccaggcttgccttcacctttttgtatgatggaaggtgtggtcagctcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttctggtgctccaggcttgccttcacctttttgtatgatggaaggtgtggtcagctcaa 324

                                                                       
Query: 125 cagagggagtatcaagcagacacacttgcactgtaactggaccacctgctcactatgtag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagagggagtatcaagcagacacacttgcactgtaactggaccacctgctcactatgtag 384

                                                                       
Query: 185 acctttgtagttcatggctcttaagggcaggcagttccctcatctcttacagggccagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acctttgtagttcatggctcttaagggcaggcagttccctcatctcttacagggccagtt 444

                                                                       
Query: 245 gtggtaagaatgtatcaagaaaaaaaatgttaaatgactggcaagtaagtgggatctcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtggtaagaatgtatcaagaaaaaaaatgttaaatgactggcaagtaagtgggatctcta 504

                                                                       
Query: 305 gttaggtgtgaccacccagtctaggcaggactgtaagcatcaggaggtgagcatggtctt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 gttaggtgtgaccacccagtctaggcaggactgtaagcatcaggaggtgaacatggtctt 564

                                                                       
Query: 365 ttttactctgcagtaaaaagctgtggttgctttgcatttgcacttcaggctatctgtacc 424
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttactctgcagtaaaaacctgtggttgctttgcatttgcacttcaggctatctgtacc 624

                       
Query: 425 tctgagtctgtg 436
           ||||||||||||
Sbjct: 625 tctgagtctgtg 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_c20.g1 MSMg01no341_c20.g1 CHROMAT_FILE:
MSMg01no341_c20.g1 PHD_FILE: MSMg01no341_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:21 2005
         (442 letters)



>mm_chr4_85151425_85152266
          Length = 842

 Score =  787 bits (407), Expect = 0.0
 Identities = 431/439 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcagctcacaaagacacacttaaggagagggtgagagaaatgattcagctgttaagc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 439 aaggcagctcacaaagacacacttaaggagagggtgagagaaatgactcagctgttaagc 380

                                                                       
Query: 61  acacaagcctgcaaagacctcgcattgggaggcacactacccgggataactggagctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acacaagcctgcaaagacctcgcattgggaggcacactacccgggataactggagctctg 320

                                                                       
Query: 121 ggggaatctcacaatcttttctagccttcgccaccattgtactctcatgcatatccacaa 180
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 319 ggggaatctcacaatcctttctagccttcaccaccattgtactctcatgcatatccacaa 260

                                                                       
Query: 181 acatatacacattttcattaaatgtttgactaaaatactcttggtattcaatgtgtcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acatatacacattttcattaaatgtttgactaaaatactcttggtattcaatgtgtcaaa 200

                                                                       
Query: 241 agatgcacaccagttgaatatacaatactaaatagtcaccttggaaaatatacagactag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agatgcacaccagttgaatatacaatactaaatagtcaccttggaaaatatacagactag 140

                                                                       
Query: 301 tgacaatatacatactaagcatggtgtatttatgtgtttagaaatatacatatgtatgtg 360
           ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 139 tgacagtatacatactaagcatggtgtatttatgtgtttagaaatatacatacgtatgtg 80

                                                                       
Query: 361 tgtatataacaacacacacatatgtacataacatattaaagaatagggggccatgaaaat 420
           |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||
Sbjct: 79  tgtatataacaacacacacatatgtacgcaacatattaaagaaaagggggccatgaaaat 20

                              
Query: 421 ttaagtgagaatattaaca 439
           |||||||||||||||||||
Sbjct: 19  ttaagtgagaatattaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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