BAC Information

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BAC

Clone NameMSMg01-341N16
Chromosome4 (Build37)
Map Location 135,185,170 - 135,185,609
singlet/doubletsinglet
Overlap genenone
Upstream geneMan1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik
Downstream geneIl28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341N16.T7 (MSMg01no341_n16.b1)MSMg01-341N16.TJ (MSMg01no341_n16.g1)
ACCAG455547AG455548
length749833
length of high quality
(start - end)
444 (41 - 484)---
definitionCHROMAT_FILE: MSMg01no341_n16.b1 PHD_FILE: MSMg01no341_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:12 2005CHROMAT_FILE: MSMg01no341_n16.g1 PHD_FILE: MSMg01no341_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCCATCACGCTTCTGGCTTGAGGAGGTATTTGGGGCTTGCTTCATAAAT
AAGAAAACTCCAAGATCCAAGACTGGGGTGTAACTATGACTATTCTGCTG
AAACTAAGATTGGCCCCATGCGCCAGAGACCAGGGCACACATGGGTCCTT
CCAGCTAACAACCCAGTGTCCACAGGTTGGAAATGACCTTGGATGATCCC
GTTACTTGGGCTGGTTAAATGGGAGCCAAGAAATTGAAGTGAAGGCTCTA
GGCTTTAGACATATTATTGAAAGGCAAAGGGCAGAAGGGACTTGAATTGT
GTGGCCATTAATGACAGCCATGCACTGGCAATGTCCCACTCTAGATTACA
AATGCTTGAATTCTCTCAAGAGTCCCCCAAGTGGCCTAGGATGTTAACAT
CCCTGTATAAGACAAGGGACACGTGGGCACAAAGAGATCAACATGCTCAG
GGCAATAGAGTTACATTGAGGTTTGAATCCAGACTGCCTGGGTTCAGAGT
CTACGTAGCTGAGCTCCTTCTCTGGGTCGGCAGTGAGGAACCACGTTCCT
CCTTCGATGTCCAGAATGGTTACTCCATATCGCATAATATAACATAGCCC
CCTGTATGCCTGTTAAAGAGTATCCAAAAACCTGGTTCAGTTTCGGTTGA
TTCACCCCCGGGAAAACAAAATCGGTTCCTTGATACCGCTCATTACATN
TCTCCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCATGCCTGTCAAAGCCTGCAAGCCTTTG
CCAGCTACTCTCAAGTGTGTGCATTGGTTGGGGAGGGGGGGAGTTCTTCC
CTTTCCTTCCCCCCCCCTCCTCTTCCTTCTCCCCCCCCCCCCCCCCTCTT
TTTTTTCTCTTTTCCTCCTCCCTCCCTCTCTTCCCTTTTCCTTTTTCTCT
TTTCTTCCCTCTTCCCCCCTTTTCCTCCCTTTTCCCCCTTTTCCCTCCTT
CTTTTCTTCCTTCTTTTTTCTTTCCTTCCCCCCCCCTTTTTTTCCTCTCT
CCCTTCCCCTCCCCTCCCTCCTTTTTTCCCTTTCCCCCCTTTTCCCCTCC
CCCCCCCCCCCCTCTTTTCTCTCCCTCTTCTCTTTTCCTCCCCCCCCTCC
CTTTCCTCTCTTTCCCCTCCCCCTTTTTTCCCCTTTTCTTCTCTTCCTTT
TTTTCCCTCCCTCTCTCCCTTCCCCTTTTTTTTCCCTTCCCTCCCCTCCC
TTCCCCTTTTTTTTCTTTTCCCTCCCTCCCCTCTTCTTTTCCCTCCCCCC
CCTCCCTCCTCCCTCTTTTTCCCTCCCCTCTTTTCTCTTTTCCTTTTTTT
CTCCCTTCTTTTTTCTCTCCCCCCCCCCCTTTTCCTCCTCTTTCTTTCCC
CCCCCTTTCTTCTTTCTTTCTTTCCCCCCTCTTTCCCCCCCTTCTTTCTT
CCCCTTTCCCTTCCCCCTTTCTCTTTCTCTCCTTTTTTTTCCCCCTTTGC
CTCTCCCCCTCCTCCCCTCTCTTTTCTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_n16.b1 MSMg01no341_n16.b1 CHROMAT_FILE:
MSMg01no341_n16.b1 PHD_FILE: MSMg01no341_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:12 2005
         (444 letters)



>mm_chr4_135184966_135185809
          Length = 844

 Score =  835 bits (432), Expect = 0.0
 Identities = 438/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccatcacgcttctggcttgaggaggtatttggggcttgcttcataaataaga 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gaattctcccatcaggcttctggcttgaggaggtatttggggcttgcttcataaataaga 585

                                                                       
Query: 65  aaactccaagatccaagactggggtgtaactatgactattctgctgaaactaagattggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaactccaagatccaagactggggtgtaactatgactattctgctgaaactaagattggc 525

                                                                       
Query: 125 cccatgcgccagagaccagggcacacatgggtccttccagctaacaacccagtgtccaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cccatgcgccagagaccagggcacacatgggtccttccagctaacaacccagtgtccaca 465

                                                                       
Query: 185 ggttggaaatgaccttggatgatcccgttacttgggctggttaaatgggagccaagaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggttggaaatgaccttggatgatcccgttacttgggctggttaaatgggagccaagaaat 405

                                                                       
Query: 245 tgaagtgaaggctctaggctttagacatattattgaaaggcaaagggcagaagggacttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgaagtgaaggctctaggctttagacatattattgaaaggcaaagggcagaagggacttg 345

                                                                       
Query: 305 aattgtgtggccattaatgacagccatgcactggcaatgtcccactctagattacaaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aattgtgtggccattaatgacagccatgcactggcaatgtcccactctagattacaaatg 285

                                                                       
Query: 365 cttgaattctctcaagagtcccccaagtggcctaggatgttaacatccctgtataagaca 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 284 cttgaattctctcaagagtcccccaagtggcctaggatgttaacatccctgtataagata 225

                               
Query: 425 agggacacgtgggcacaaag 444
           ||||||||||||||||||||
Sbjct: 224 agggacacgtgggcacaaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)