BAC Information

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BAC

Clone NameMSMg01-342G13
Chromosome4 (Build37)
Map Location 152,498,393 - 152,643,648
singlet/doubletdoublet
Overlap genenone
Upstream geneEspn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342G13.T7 (MSMg01no342_g13.b1)MSMg01-342G13.TJ (MSMg01no342_g13.g1)
ACCAG455969AG455970
length728738
length of high quality
(start - end)		244 (62 - 305)400 (67 - 466)
definitionCHROMAT_FILE: MSMg01no342_g13.b1 PHD_FILE: MSMg01no342_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:55 2005CHROMAT_FILE: MSMg01no342_g13.g1 PHD_FILE: MSMg01no342_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,498,393 - 152,498,632)(152,643,249 - 152,643,648)
sequence
TGTTGGCGCTAAACGACTCACTATTTCAAGAGAGAGCGCGGAATTCAGGG
TTAACGAAAAGAAGAGAGCTGGATGATAAAGGGGTCTTTTCTGGAAACAG
GCAAATCTATTTCTAGGAGTTTAGACACCACCCTCTCTGCTGCTTTTGTG
GCTTAATCTGGTCACTGTGGTGATTGTCACTGACTTGGTGGCATGTGGAC
AGGACTACAGTGACATTAGGGGTGACTTGGAGTCACTGTCAGCCAGTGTA
GACCTTGTAGTTTCAACCAGCCTGTAGAGAGGGGCTCCGGTCCACAACCA
TTCTTTCTTTCTTAAATAAGGTAAAAGCCAGCTTAGGGGTCTGATGGTCA
GGTAAACAGGTGTCACCCCTGAGGAAGAACCACCCAAGGAGGGATGGTGA
GAACTCCACGGACATCTGGTAGCTGTCATTCTGCATGGGCAGGGACCAAG
TGTGGCTGGTGCTGGCCATGCTCATATCAGATACAAACTTGATTGTTATA
GGTGAGCGTATACGGCCAGAGCTTTCTAAACTCATGACCCCTTTGTCCAG
TTGAGAAACCATTTGCCTTTAACCCCGTACACTGACCGGCTACTAAGCGC
ACCTTTTTACATATTATTTTTTCCCATGGCACAACCTTTTTTTTTTTTGT
GCTCCCAAACAAAAACCCCATCTCCCCTTGCTTTTTTCGGGCGCTCACTC
CTGTTCTTTTTACTCACTCCTCACCAAC

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTGATCTGGAAAGGCTGAGGGGGTGGGTCTCC
CTTGGGTCTATGGATGGTGGGTGGGGCATCTGGAATCCTAATGACAATGT
CCTGTCCCAATGGACAAGATCTCAGTCTGTGGCTTCAACTCTGGTACTGT
GAACTGGAAGCTTAGTTCCTTCTAGGCTCCCAGTTATTCAGGAAGCCCTG
CTAGCCTCAGGCAGAGAAGGCTAAGATGTGGGTTTCTGAGACCACAGAAG
CATCTCACATAGCCTGGTGTAGTGATAGTTGCCAATCTTACTTTGAGTCT
TTGTGTAGGTGTTGGGCTATACCTCAGCAAATCTTGCAATCAAAGCTTCA
GGCTGCACCCCCTCACTTGGGGGCCGGAAGAAGCGGGGAACTGACCCTCC
CTGGGAAAGGGAGTGGACTCATCATAAGCGGCTTGTGCAGAGCTCCTCCG
TTGTCCCCTGGCCATTGTTCCAGTTTAACAAAATGTTGTTTATTAAATGA
CCAAGTTTATTGGATCCTATTTTTTTAATTCCTTTACCCCCTAATAATCT
TTGTGAAACCTCCTCTTAAATGTTACCCGCGTCGTGTATCTTTGCCTTTT
ACCCTTTCCCCACCTCCCCATATCTGCCCTTCTTTTTTATATTTCTCCCC
TTTTCACTTTCAGTCCCGACCTTTTTTTTTTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_g13.b1 MSMg01no342_g13.b1 CHROMAT_FILE:
MSMg01no342_g13.b1 PHD_FILE: MSMg01no342_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:55 2005
         (244 letters)



>mm_chr4_152498193_152498836
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagagctggatgataaaggggtcttttctggaaacaggcaaatctatttctaggagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagagctggatgataaaggggtcttttctggaaacaggcaaatctatttctaggagtt 260

                                                                       
Query: 61  tagacaccaccctctctgctgcttttgtggcttaatctggtcactgtggtgattgtcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagacaccaccctctctgctgcttttgtggcttaatctggtcactgtggtgattgtcact 320

                                                                       
Query: 121 gacttggtggcatgtggacaggactacagtgacattaggggtgacttggagtcactgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttggtggcatgtggacaggactacagtgacattaggggtgacttggagtcactgtca 380

                                                                       
Query: 181 gccagtgtagaccttgtagtttcaaccagcctgtagagaggggctccggtccacaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagtgtagaccttgtagtttcaaccagcctgtagagaggggctccggtccacaaccat 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no342_g13.g1 MSMg01no342_g13.g1 CHROMAT_FILE:
MSMg01no342_g13.g1 PHD_FILE: MSMg01no342_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:55 2005
         (400 letters)



>mm_chr4_152643049_152643848
          Length = 800

 Score =  735 bits (380), Expect = 0.0
 Identities = 395/400 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttgatctggaaaggctgagggggtgggtctcccttgggtctatggatggtgggtgggg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 600 ccttgatctggaaaggctgagggggtgggtctccgttgggtctatggatggtgggtgggg 541

                                                                       
Query: 61  catctggaatcctaatgacaatgtcctgtcccaatggacaagatctcagtctgtggcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 catctggaatcctaatgacaatgtcctgtcccaatggacaagatctcagtctgtggcttc 481

                                                                       
Query: 121 aactctggtactgtgaactggaagcttagttccttctaggctcccagttattcaggaagc 180
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aactctggtcctgtgaactgggagcttagttccttctaggctcccagttattcaggaagc 421

                                                                       
Query: 181 cctgctagcctcaggcagagaaggctaagatgtgggtttctgagaccacagaagcatctc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 420 cctgctagcctcaggcagagaaggctaagatgtgggtttctgaggccacagaagcatctc 361

                                                                       
Query: 241 acatagcctggtgtagtgatagttgccaatcttactttgagtctttgtgtaggtgttggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acatagcctggtgtagtgatagttgccaatcttactttgagtctttgtgtaggtgttggg 301

                                                                       
Query: 301 ctatacctcagcaaatcttgcaatcaaagcttcaggctgcaccccctcacttgggggccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctatacctcagcaaatcttgcaatcaaagcttcaggctgcaccccctcacttgggggccg 241

                                                   
Query: 361 gaagaagcggggaactgaccctccctgggaaagggagtgg 400
           ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 240 gaagaagtggggaactgaccctccctgggaaagggagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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