BAC Information

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BAC

Clone NameMSMg01-342L03
Chromosome4 (Build37)
Map Location 24,849,298 - 24,849,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664973, F730047E07Rik, Klhl32, 1110007M04Rik
Downstream geneC230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342L03.T7 (MSMg01no342_l03.b1)MSMg01-342L03.TJ (MSMg01no342_l03.g1)
ACCAG456184AG456185
length731729
length of high quality
(start - end)
379 (34 - 412)352 (64 - 415)
definitionCHROMAT_FILE: MSMg01no342_l03.b1 PHD_FILE: MSMg01no342_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:17 2005CHROMAT_FILE: MSMg01no342_l03.g1 PHD_FILE: MSMg01no342_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGTGTT
CCAGGAAGAAGGGAACCTCTACCCCAAGTGATACTCTTAAGCTTTAAAAG
GAGGCACTGGTTATGAGAATGCTCACTGCCTTGTTGGTTGGTTGCCTGCT
TGCTTCCTTGCTTGCTTGCTTTTTTTTTTCCTATTTTCTGTTGCTACGAC
AAAGTAGCTGGGTCTAGGAAGTTTACCAAATAAAGGAGTTCATTTGGATT
GCAGTTTCTAAGGCTGAAAAGCCAGTGTCACACAGTGTCAGGACTCCAGT
GAGGGCTGCATCACATCACAATGGGAAAGCACAGGTACATGGTAGCCTGC
TTTTTTTTTTTTTTTTTAGGTATTTTCCTCATTTACATTTCCAATGCTAT
CCCAAAAGTCTCCCATACCCTCCCCCCCCCCACTCCTCTATCCTACCCAT
TTTCCACTTTTTTGGGCCCTGTGTGCCTCCCCTGAACTGGGCCCAAAAAA
AGTTTTCCATTGTCCCAAGGCGCTCTTCTCTCTTCCATTTTATGGCCTAC
AAAATGTCTATTTTTCGAAAACATATTTTCCCCTTACACTCCTAAATTTT
CCGTCTCCCACCTACTTTTTTCCCCCTTTTTTTTTTCTCCTTTTTATTCC
TACCCCCACTTTCCTTTTTTTTTTTTTTTCGCCCATATTTCTTCTTCTCT
TTTCCTCCGCTTTTTTCCTCTTATTTTCTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGGTTGAATAGAAAGAAATGAGCTGACTACAGATGC
GGTGTGACCAGCCACATCAATCCCACTGATAAGCTATCTCTGCCATGATG
AACCATAGCATCAAACTGTAAGCCAAAATCAGCGCTTACCTCGCTACATT
GTCTTTGTCAGATTTTTGTCACAGAATTAAGAAAAATAATACAGATAATC
AGTAGCAGGAGTGGAATGGGTCGTGTGATAAACTGGACCATGTGGTTCTT
AGGTCTTTAAAACTGGTTTGCAGGAGGAATGTGAAAGCCCTGAAATCTAG
TAAACAGAACTTAATGGGACACTTTGGTGGCAGTCTGGAAGACCAAAATG
CTGGCAGAAATGTAGACAGTAGAGGCCAAGAAGAGGAGGTTTTTGAGGTG
AATAAGACCTCTATCTATAACTATAATTAGAGGCTGATTATGTTATATAT
TCTGGCAACTAATTTGGCTGCATTCTGCCTTGACAACTCTAATAAGCTGA
GTTCATCAGTGATGGGACTCATTTATTTGGCGAATAATTCCAAGTTAAAA
TTGAAGCTGTGGCCGGCTTTATGCTTCCTGTTATTATCTAATACCCCCCA
AAAGCCAAATTAGTCCGCCCATTGTTAAAGCTCTTAACACAATGTCTCTT
TTTTTTTTTATACATCCTCAATTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_l03.b1 MSMg01no342_l03.b1 CHROMAT_FILE:
MSMg01no342_l03.b1 PHD_FILE: MSMg01no342_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:17 2005
         (379 letters)



>mm_chr4_24849014_24849792
          Length = 779

 Score =  495 bits (256), Expect = e-144
 Identities = 362/446 (81%), Gaps = 79/446 (17%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtgttccaggaagaagggaacctctaccccaagtgat--------------- 49
           ||||||||||| || ||||||||||||||||||||||||||||||               
Sbjct: 724 gaattcatgtgctctaggaagaagggaacctctaccccaagtgatactcttaaggttatc 665

                                                                       
Query: 50  --actcttaagctttaaaaggaggcactggttatgagaatgctcactgcctt-------- 99
             ||||||||||||||||||||||||||||||| ||||||||||||||||||        
Sbjct: 664 acactcttaagctttaaaaggaggcactggttaggagaatgctcactgccttgttggttg 605

                                                                       
Query: 100 ------------------------gttggttggttgcctgcttgc-ttc----------- 123
                                   ||||||||||||||||||||| |||           
Sbjct: 604 gttgcttggttggttggttgcttggttggttggttgcctgcttgctttcttgcttgcttg 545

                                                                       
Query: 124 --------cttgcttgcttgc----ttttttttttcctattttctgttgctacgacaaag 171
                   |||||||||||||    |||||||||||||||||||||||||||| ||||||
Sbjct: 544 cttgcttgcttgcttgcttgcttgtttttttttttcctattttctgttgctaccacaaag 485

                                                                       
Query: 172 tagctgggtctaggaagtttaccaaataaaggagttcatttggattgcagtttctaaggc 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tagctgggtctaggaagtttaccaaataaaggagttcatttggattgcagtttctaaggc 425

                                                                       
Query: 232 tgaaaagccagtgtcacacagtgtcaggactccagtgagggctgcatcacatcacaatgg 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgaaaagccagtgtcacacagtgtcaggactccagtgagggctgcatcacatcacaatgg 365

                                                                       
Query: 292 gaaagcacaggtacatggtagcctgctttttttttttttttttaggtattttcctcattt 351
           ||||||||||||||||||||| |||||||||||||||      |||||||||||||||||
Sbjct: 364 gaaagcacaggtacatggtagactgcttttttttttt------aggtattttcctcattt 311

                                     
Query: 352 acatttccaatgctatcccaaaagtc 377
           ||||||||||||||||||||||||||
Sbjct: 310 acatttccaatgctatcccaaaagtc 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)