XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTATA
ACATTGTGTTTCAGTAATGTCTTGGGTGCATTTCAGTCTAATAATATTGA
CCCTCAAGATGAATCACTATAGTATGAGAGTCTGATGGTAAGTTTTACAT
GTTTGTCATGTGTGCTAACATGCATGTGATTTTTTTTTTTGCCTAAAATA
TCCTATTGTTCTGGCATGTGTTATAAAAAGTGCTCAGGTTTTCCACTAAA
TCTTTTAAGTATTTAATTATTTAACATTGTTTGGGCTATGTGCACGAGTA
TTTCTATATATGCCATTCTGTTCAGATGATCTGCATGTCTATCCTTTTGC
CAGTGCCTCATGCCATACATACCATTGGTATTCAGTGAGCCTAAATACAC
AATAGAATTATATCCCTCATTTTCTACTTCTGTGTCAAGATAATTTTGGT
TATCCTAGAGCCAGTAATTTCCATATACACTTTAAAACAAGGTTATTTAT
ATCCACAAAAATCCTTTCTGGGACTTGCACGGGAATTTATTAACAGTCAG
CATCAACTTATCTAAGCATTGACATTTTTATTATATGGAAAATATAGCCC
GTGACATTGTAGTTCTTCCATTCACTTGTAATTTCTATACTTTATTTTGC
TTTTGCTTATTTTCTTTTCAGCATGTACGTTTTAAATTGCATTGCTGTAT
G

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTG
AAAAGATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCATCTCACTCCAGTCAGAATGGCTAAGATCAAAACTTCAG
GTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCGCAGTATCTC
TCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCGGAAGCTGGAAAGA
ACCCAGATGCCCCTCAATAGGGGAATGGATACAGAAAATGTGTCACATTT
AGACAATGGAGTACTACTCAACTATCAAAAAGAATGGATTTATGAAAGTC
CTTGGCAAACGGAGGGACCTGAAGGGCATCATCCTGAGTGAGTAACCGTA
TCACAAAAGAATTCCCATGTATTGTATTCCCTGAGAAGTGGGAATTACTT
CCCAAAACTTTCAATATCCCCGATTGTTCAATCTTTTTGCTAAACAACTG
GAATCTCCGAG

Query= MSMg01no342_m02.b1 MSMg01no342_m02.b1 CHROMAT_FILE:
MSMg01no342_m02.b1 PHD_FILE: MSMg01no342_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:22 2005
         (578 letters)



>mm_chr4_69341814_69342792
          Length = 979

 Score = 1025 bits (530), Expect = 0.0
 Identities = 565/578 (97%), Gaps = 4/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttataa-cattgtgtttcagtaatgtcttgggtgcatttcagtctaataata 63
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttacaaacattgtgtttcagtaatgtcttgggtgcatttcagtctaataata 264

                                                                       
Query: 64  ttgaccctcaagatgaatcactatagtatgagagtctgatggtaagttttacatgtttgt 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 ttgaccctcaagatgaatcactatagtatgagagtctgatggcaagttttacatgtttgt 324

                                                                       
Query: 124 catgtgtgctaacatgcatgtgattttttttttt---gcctaaaatatcctattgttctg 180
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| 
Sbjct: 325 catgtgtgctaacatgcatgtgattttttttttttttgcctaaaatatcctattgttcta 384

                                                                       
Query: 181 gcatgtgttataaaaagtgctcaggttttccactaaatcttttaagtatttaattattta 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 gcatgtgttataaaaagtgctcaggttttccagtaaatcttttaagtatttaattattta 444

                                                                       
Query: 241 acattgtttgggctatgtgcacgagtatttctatatatgccattctgttcagatgatctg 300
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 445 acattgtttgggctatgtgcacgagtatttctaggtatgccattctgttcagatgatctg 504

                                                                       
Query: 301 catgtctatccttttgccagtgcctcatgccatacataccattggtattcagtgagccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgtctatccttttgccagtgcctcatgccatacataccattggtattcagtgagccta 564

                                                                       
Query: 361 aatacacaatagaattatatccctcattttctacttctgtgtcaagataattttggttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatacacaatagaattatatccctcattttctacttctgtgtcaagataattttggttat 624

                                                                       
Query: 421 cctagagccagtaatttccatatacactttaaaacaaggttatttatatccacaaaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctagagccagtaatttccatatacactttaaaacaaggttatttatatccacaaaaatc 684

                                                                       
Query: 481 ctttctgggacttgcacgggaatttattaacagtcagcatcaacttatctaagcattgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctttctgggacttgcacgggaatttattaacagtcagcatcaacttatctaagcattgac 744

                                                 
Query: 541 atttttattatatggaaaatatagcccgtgacattgta 578
           |||||||||||||||||||||||| |  ||||||||||
Sbjct: 745 atttttattatatggaaaatatagtctatgacattgta 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)