BAC Information

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BAC

Clone NameMSMg01-342O21
Chromosome4 (Build37)
Map Location 25,260,803 - 25,261,170
singlet/doubletsinglet
Overlap genenone
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2
Downstream geneLOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1, Manea
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342O21.T7 (MSMg01no342_o21.b1)MSMg01-342O21.TJ (MSMg01no342_o21.g1)
ACCAG456363AG456364
length757803
length of high quality
(start - end)
372 (35 - 406)153 (65 - 217)
definitionCHROMAT_FILE: MSMg01no342_o21.b1 PHD_FILE: MSMg01no342_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:35 2005CHROMAT_FILE: MSMg01no342_o21.g1 PHD_FILE: MSMg01no342_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCACTATTTTCAGAGAATGCGCGGAATTCTTTAGTTT
TCTGCTTAGCTTATTTATTTGAAGTATAATTCTAATGAAAGTCATTCGAA
AGCATTTTTCATAATAGATATTGTAAAATAAATTGAAACATGTAATTGAA
TATGGAGATCATGGGAAAGAAAAAAATGTTGATTTTTCTACCTCTTCAAA
GGAATGGATTAGGATTGTTTTTGAAGATGAACACGAAACACTGTTATGAT
AGGACAAAAACAAAAGGTAATTTTTATCATTTGCATTTTGCTATGCCCAA
TCTTACCTTCGGGAACAAACATAGTATTTTGTTGTGATACCTACTCATAA
TGTAAATCAGTAATTGTATTCTACTTCCATTTAGAAACATTAAATGAAAT
CCTGCCCCGCCACGAGCACTGGGATTCAAATTCACATGTTATTTCTAAAC
ATATCACATACCACCTGAAAATATACAAAGAATGCCAGTGGGCTACAGTG
ATCTTGCCAAACCTGAGGACAACTGAGAAAAGAAGATTGGCCTAACTAAA
CGTTTGAAGAAAAGTGGGTTGATTGGGCTGGATCCTTTTTTGCCCATTCC
GGTATATTAAAACTTTTCTGCAAAAAGAAAATTCTCTTTAGAATATGGGC
CCTCTTCATTGTCTCTGTTCGATATATTAAAACACTTTTTTCTTTTTCTA
TATAATAAAATAAGAAAGTCCCCATCCCTCTTTTTTTATTTTCATATTTT
CTCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCAAGATACATTCCACAGAACTCAAAAAGGTCAACA
AGCTGAAGTGCCCAGGTGAGGACACCTCAGTCCCACTTGGGAGAGAGAAG
AAAGCAATCACAAGTGGAGAGGGAGGGAGGGAACTAGGAGGGAAAGTGGA
GGGGGCAAGGAGGTGTAGAATNNTTTTTTNTNTTTTTTTTNNNGTTTTTT
TTGCCTGTTTNNNNGNGTTTTTGGTGGTGGTGGGTTTTTGTTTTGTTGTT
TTTTTTTTTTTTTTNGTTTTTTTTTTTTTTTTTTTTTTGGTGTGTGTGGG
GTTTTTTTTNTTTCGTTGTTGCTTTTTTTTTCCTTTTTCCCTTTCCTTTT
TCTTCCCCCTTCCTCCCTTTTTTTTCCCTTTTTTTTTTCCCCTTTCCTTT
TTTTTTTTTCCTCTTTCCCCCCCCCTCCCCTCGGTTTCTTCTTTTGTTCT
TCTTTCCCCCCTTTGTCTTGTCCCCTCGTCTTTTTTCTCCCCTCTTCCTC
CCTTTTCCTCTTTTTTTTTTTTTGTTCTCCCCTTTCTGCCTCGCGCTCTC
TTTTTCTTTTTTTCTCTCCTTTCCCTCCTCTCCTCTCCCTCCGTTTTTTT
GCTGCTCCTTGTTTTTCTTCCCCCCTCTCTCTTTTCTCTTGCTTTTTGCG
GTTTTCCCTTGTCCTCCCCTCTTTCTTTTCCCTTCTTCTCTTTCTCTTCC
CTCTGCTCCTTTGTCCCCTTCTGCGCCCCGCCCCCTTGCTTCCTTGTTCT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_o21.b1 MSMg01no342_o21.b1 CHROMAT_FILE:
MSMg01no342_o21.b1 PHD_FILE: MSMg01no342_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:35 2005
         (372 letters)



>mm_chr4_25260601_25261372
          Length = 772

 Score =  673 bits (348), Expect = 0.0
 Identities = 363/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctttagttttctgcttagcttatttatttgaagtataattctaatgaaagtcatt 62
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctttagttttatgctttgcttatttatttgaagtataattctaatgaaagtcatt 262

                                                                       
Query: 63  cgaaagcatttttcataatagatattgtaaaataaattgaaacatgtaattgaatatgga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgaaagcatttttcataatagatattgtaaaataaattgaaacatgtaattgaatatgga 322

                                                                       
Query: 123 gatcatgggaaagaaaaaaatgttgatttttctacctcttcaaaggaatggattaggatt 182
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtttatgggaaagaaaaaaatgttgatttttctacctcttcaaaggaatggattaggatt 382

                                                                       
Query: 183 gtttttgaagatgaacacgaaacactgttatgataggacaaaaacaaaaggtaattttta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtttttgaagatgaacacgaaacactgttatgataggacaaaaacaaaaggtaattttta 442

                                                                       
Query: 243 tcatttgcattttgctatgcccaatcttaccttcgggaacaaacatagtattttgttgtg 302
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagttgcattttgctatgcccaatcttaccttcgggaacaaacatagtattttgttgtg 502

                                                                       
Query: 303 atacctactcataatgtaaatcagtaattgtattctacttccatttagaaacattaaatg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atacctactcataatgtaaatcagtaattgtattctacttccatttagaaacattaaatg 562

                   
Query: 363 aaatcctg 370
           ||||||||
Sbjct: 563 aaatcctg 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)