Query= MSMg01no342_p01.b1 MSMg01no342_p01.b1 CHROMAT_FILE:
MSMg01no342_p01.b1 PHD_FILE: MSMg01no342_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:36 2005
(188 letters)
>mm_chr4_75829659_75830246
Length = 588
Score = 344 bits (178), Expect = 2e-99
Identities = 184/186 (98%)
Strand = Plus / Minus
Query: 1 aagattggtatagcagtgaggaaaaaatgcaagagtgttttaaaacctgagtcttgatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagattggtatagcagtgaggaaaaaatgcaagagtgttttaaaacctgagtcttgatgc 327
Query: 61 tcagaccagtcctaattgaagtcaacagctgcatccatggtcattctgccctgaaggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcagaccagtcctaattgaagtcaacagctgcatccatggtcattctgccctgaaggcac 267
Query: 121 ctatcctctaaaatatacagatgcagtcctcctcctatcctgtgactttcagatttatgt 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 ctgtcctctaaaatatacagatgcagtcctcctcctatcctgtgactttcagatttgtgt 207
Query: 181 atccag 186
||||||
Sbjct: 206 atccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space: 104400
Effective search space used: 104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no342_p01.g1 MSMg01no342_p01.g1 CHROMAT_FILE:
MSMg01no342_p01.g1 PHD_FILE: MSMg01no342_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:36 2005
(485 letters)
>mm_chr4_75640239_75641122
Length = 884
Score = 907 bits (469), Expect = 0.0
Identities = 481/485 (99%), Gaps = 1/485 (0%)
Strand = Plus / Plus
Query: 1 tgagaagcatgttcagagggaaagctagtacaaaagtctggctccatccccgagaacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaagcatgttcagagggaaagctagtacaaaagtctggctccatccccgagaacaat 260
Query: 61 ttagagatgaggcaccgggtacagtgaacgggaattcagaagtgcagcgggctctgtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagagatgaggcaccgggtacagtgaacgggaattcagaagtgcagcgggctctgtgag 320
Query: 121 gttgttcaagcttcactgctaacaatggagaaaccaattcatttcatttggcaacaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgttcaagcttcactgctaacaatggagaaaccaattcatttcatttggcaacaaaat 380
Query: 181 gtggtattcagaagccagccttgaaacaacaatgctaagaaaacaaccctctaactaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtattcagaagccagccttgaaacaacaatgctaagaaaacaaccctctaactaaac 440
Query: 241 tatagctgaggctttcaattgcatttcatcctgaaagtgttttctatgacaaaagaagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagctgaggctttcaattgcatttcatcctgaaagtgttttctatgacaaaagaagag 500
Query: 301 cttcactgttccttctaatccaacccaaggagctgggaggggccaggcaatgtgctatct 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 cttcactgttccttctaatccaacccaaggagctgggagggggcaggcaatgtgctatct 560
Query: 361 tctatgcacctattaggaaaggctaaagatggagatctaggccatgatatttgaactgca 420
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 tctatgcacctagtaggaaaggctaaag-tggagatctaggccatgatatttgaactgca 619
Query: 421 aagtatagctactttaaactgctatctaaacaacttttattctgatagtgatatccctat 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 aagtatagctactttaaactgctatctaaacaactttttttctgatagtgatatccctat 679
Query: 481 gcgta 485
|||||
Sbjct: 680 gcgta 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space: 415150
Effective search space used: 415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
