Query= MSMg01no343_h20.b1 MSMg01no343_h20.b1 CHROMAT_FILE:
MSMg01no343_h20.b1 PHD_FILE: MSMg01no343_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:20 2005
(277 letters)
>mm_chr4_47780292_47780968
Length = 677
Score = 337 bits (174), Expect = 6e-97
Identities = 186/190 (97%)
Strand = Plus / Plus
Query: 88 tgttgtgccatctctccaacacatcttgctctattgcttaactttttcatatttttaaca 147
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 288 tgttgtgccatctctccaacacatcttgctctattgcttagctttttcatatttttaaca 347
Query: 148 tttatttgaagttttaaggttttgattttttttaactacaaagtgattgcagtgaaaaga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttatttgaagttttaaggttttgattttttttaactacaaagtgattgcagtgaaaaga 407
Query: 208 tatttaaatataaaagatcctaagaggtgaaggggagggatgggaaagaggtcagattca 267
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 408 tatttagatataaaagatcctaagaggtgaaggggagggatgggaaagaggtcagaccca 467
Query: 268 cttgtttact 277
||||||||||
Sbjct: 468 cttgtttact 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no343_h20.g1 MSMg01no343_h20.g1 CHROMAT_FILE:
MSMg01no343_h20.g1 PHD_FILE: MSMg01no343_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:21 2005
(346 letters)
>mm_chr4_47966354_47967100
Length = 747
Score = 395 bits (204), Expect = e-114
Identities = 284/346 (82%), Gaps = 60/346 (17%)
Strand = Plus / Minus
Query: 1 gccagggatatgtagtaagaccttgcctttttgtttaaaaaaagaaagaaagaaagaaag 60
||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gccagggatatgtagtaagaccttgcctttttgtttaaaa-------------------- 662
Query: 61 aaagaaagaaagaaagaaagaaagaaagaaagaaagagagagagagagaaagagagagag 120
|||||||||||||||||||||||||||||||| | |||
Sbjct: 661 ----------------aaagaaagaaagaaagaaagagagagagagag-------g-gag 626
Query: 121 agagagagagagagagagagaaaagaaaaagaaaaaagaaaaaggaaaagtaaaaggaaa 180
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 625 agagagagagagagagagagaaaagaaaaagaaaaaagaa-----aaaagaaaaaggaaa 571
Query: 181 aggaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaaaaaggataaca 240
|||||||| ||||| | |||||||||||||||||| ||||||||||||||||
Sbjct: 570 aggaaaagtaaaag-----g-aaaagaaaaagaaaaaga-----aaaaaaaaggataaca 522
Query: 241 agttccttctaaattgagggcattggcttgttaaattgtgtttgtcttcatgcttcactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agttccttctaaattgagggcattggcttgttaaattgtgtttgtcttcatgcttcactt 462
Query: 301 actgtgaaactcacacttaactctccttcccttctgaggacagctt 346
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 actgtgaaactcacacttaactctccttcccttctgaggacagctt 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space: 248706
Effective search space used: 248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
