BAC Information

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BAC

Clone NameMSMg01-343I08
Chromosome4 (Build37)
Map Location 10,914,690 - 10,915,061
singlet/doubletsinglet
Overlap geneLOC100039746
Upstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992
Downstream genePlekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343I08.T7 (MSMg01no343_i08.b1)MSMg01-343I08.TJ (MSMg01no343_i08.g1)
ACCAG456811AG456812
length741770
length of high quality
(start - end)
356 (63 - 418)374 (69 - 442)
definitionCHROMAT_FILE: MSMg01no343_i08.b1 PHD_FILE: MSMg01no343_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:23 2005CHROMAT_FILE: MSMg01no343_i08.g1 PHD_FILE: MSMg01no343_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCGA
AGCTCTTACCATGTCCGGGATGATGCCGGACACCCTGTCCAGACCCCAGC
CGAGATAGATGAAGGATTCCTCTTGACCCACCCTCAGTGGGATCATAACA
CGGCATGAGGTAGGGAACAGCTGTCTAATTACCGGCGGGCTCTAGTGGCG
GGTCTCAGAGGTGCCATACAAAGGCCCACAAATTTGGCTAAGGTAAGAGA
GGTTGTTATTAGACGCGTTCTCACGCCCGGCCAGGAAAGATGCAACAGAC
CAGAATCTTCTGCGTTTTAACTTTATTGCTTACATCTTTGGGAGCCAGGA
GAGCAAGCGCCCAGCGCCCAGCCCCAAAAACGAAAGCCCCTCTATAATCT
TAGGAGCCAGAGCTCCGGCGCGCCAAAGCGCAGAGCGTGCTCTATTGTTT
ACATCTTTAGGCAGCGAGCGAGCGCTGGGCGCGTCAAGCCTTATAGACGC
CATTGACAGATAATGGCGTAATATACCCTCCCCCTTTAAGGGTTATGTAC
CTTTCCCTCATTATCTTCTCTCCTTTTTTGCTTTTACTTTCGGCCCCATC
TATTTCCCCCCTTTTTTTTTTTTCTCCCCTTCTCCTTCTTTTTCCTGGTC
TTTTTTTTCAACTTTATCGTTTCTTCTTCTCATTTTCTGCTTTCCCTTTT
ATTCCTGTTTTGTCCTTCTTTTTTTCTTTTTCTCCCCTTCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATTGCCCCTGATAAAAACTTGTATCGCCA
AAGCTTTTCAACTATCATTTTAATGTGGCTTACTTACTAGAACAATTAAC
TGGATAGCAAAGGGGGTAAATACCAGTCAATCTCCCTGTTCTTTCTACTC
TTGGAAAATTAAGATGTTAAGAGTCACCGAGAGGGGGACAGCCTAAGAGC
AGCTCGCAGAAGCACCATGGTTCACCTCATCACCTTTTCTGCAAAGCCTA
TCACAGTGTCCACCTAAGCATACACCTTGCTTCGGGTGGCTGCACCAATC
AGCCTTTTTACCACATTGTGGTTGCTCACAAGTGTTACAGGAATGGTCAC
TTCCTGGAGCAATTGGGCTCCGATGATCCACTGCCCAAAAGTAATGGAGA
AAACTTTGTTGCCTCTCACCTGGACCAGATCCGGCTTTGGATTGGCTGTG
GTGCTCCCTTCTCTAATCCTACGAGAAACCTTATGTTTTTTTTTTGGCTT
CTCCCTTCCATCCACCCTTCACCAATAACGTATGATGGTCCTCTCATCTT
TTTCACTGCTCTTCCACCTCACTTTTAATTTTCCTTTTTTTCTGTGCCCT
ATATATTACAATCTCATTCCACCATCTTAATATCATTGCTCTCTTTTCCA
TCTTCACTATTTTCCTGTCTTCTCATTGCTAATTATACTCTATCTTACTT
TTTTTTTTTTTTCTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_i08.g1 MSMg01no343_i08.g1 CHROMAT_FILE:
MSMg01no343_i08.g1 PHD_FILE: MSMg01no343_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:23 2005
         (374 letters)



>mm_chr4_10914490_10915261
          Length = 772

 Score =  646 bits (334), Expect = 0.0
 Identities = 364/374 (97%), Gaps = 2/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattgcccctgataaaaacttgtatcgccaaagcttttcaactatcattttaatgtgg 60
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tttattgcccctgataaaaacgtgtatctccaaagcttttcaactatcattttaatgtgg 260

                                                                       
Query: 61  cttacttactagaacaattaactggatagcaaagggggtaaataccagtcaatctccctg 120
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 cttacttactaggacaattaactggatagcaaagggggt-aataccagtcaatctccctg 319

                                                                       
Query: 121 ttctttctactcttggaaaattaagatgttaagagtcaccgagagggggacagcctaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttctttctactcttggaaaattaagatgttaagagtcaccgagagggggacagcctaaga 379

                                                                       
Query: 181 gcagctcgcagaagcaccatggttcacctcatcaccttttctgcaaagcctatcacagtg 240
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 380 gcagctcgcagaagcaccatggttcacctcaccgccttttctgcaaagcctatcagagag 439

                                                                       
Query: 241 tccacctaagcatacaccttgcttcgggtggctgcaccaatcagcctttttaccacattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccacctaagcatacaccttgcttcgggtggctgcaccaatcagcctttttaccacattg 499

                                                                       
Query: 301 tggttgctcacaagtgttacaggaatggtcacttcctggagcaattgggctccgatgatc 360
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 500 tggttgctcacaagtgttacaggaatggccacttc-tggagcaattgggctccgatgatc 558

                         
Query: 361 cactgcccaaaagt 374
           ||||||||||||||
Sbjct: 559 cactgcccaaaagt 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 772
Length adjustment: 9
Effective length of query: 365
Effective length of database: 763
Effective search space:   278495
Effective search space used:   278495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)