BAC Information

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BAC

Clone NameMSMg01-343P11
Chromosome4 (Build37)
Map Location 24,809,284 - 24,809,652
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664973, F730047E07Rik, Klhl32
Downstream gene1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343P11.T7 (MSMg01no343_p11.b1)MSMg01-343P11.TJ (MSMg01no343_p11.g1)
ACCAG457144AG457145
length788757
length of high quality
(start - end)		378 (36 - 413)354 (65 - 418)
definitionCHROMAT_FILE: MSMg01no343_p11.b1 PHD_FILE: MSMg01no343_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:00 2005CHROMAT_FILE: MSMg01no343_p11.g1 PHD_FILE: MSMg01no343_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAT
ATCTCTCACAGACTTGCTTGTTATGAAAGAAGGAACATCTTTTGATAACA
GTTTTGGTTTTAATAGCAGTGAGGTAATTTTGCTCTGCTCATAACAGTTA
AATCAACACAGCAACTCTCTGTATCTTGGTCTTTGCAAAGGAAATTTTTG
GTAAGGAGAAATACTATGAGAAGCAAATATTCAAGAACTACTTTTTATTT
AAAACATCATAAAAGCATGGAATTTACATTCCAGGAATTCTAGAAGAGCT
TTGAAAAGTCAAACTGTGTTGTTCACACTGTGTATCTGTCTTTGAACATG
TAATCCTTTCTTTCTACTCTTGTTGTCTCTGTGGTTCTTTGTGTATCATC
CAAGGCATACCCCCCATGCTGGCCACAGACAGACCTGATGTTGGCCATAT
GACTTCCTGACTTATGGTTCTTTGAAGCAAGTTCTTATCATCTTTGTGAC
ACACTTTCCTCTACTACATATATTCTATTCTTTTGTTTAAGATTCTATGA
TACCCAATCCATTTCGAATTGTACTCGTATTGGTTAATTCCTTCAAATGA
TTATATTTATATACATCGCACCTAATTAGTGATTGAAATCAATTCTTACT
CATTCCAGTTATAATCCATTAACTAGAATTTATTCTCTATACCCAATTCT
TTTTTCTATTATACTCATACTACTTATTCATCATCATTAATTATTTTTCC
ATTCTATTATCCTCTACTCTCTATACTCGCCATTCTGN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGGCATATACTAATACCAGATGAGAGCCATCCAGGC
TCATGGACTGAACATTATTAGAAGATGGCTCAGTGGGTAAGAGCACCCGA
CTGGTCTTCCAAAGGTCCGGAGTTCTAATCCCAGCAACCACTTGGTGGCT
CACAACCATCCGTAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGA
CAGTTACGGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAA
AAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGC
CAACTTTAGATGCCCCAGTACAGGGGAATGCCAGGGCAAAAAAGGGGGAG
TGGGTGGTTAGGGGATTGNNNNNNNNNNNNNNNNNNNNTTNNNNNNNNNN
NNNNTNNNNNNTTNTTNNNNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNT
TTTNNTTTTTNNTTTTTTTTTTTTTTTTNNNTTTTTTTTTNTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTNTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTNNNNTTNTTNNNTTTTTTTTTTTT
TNTTTNTNTTTTTTTTTTNTTTTTTTTTNNTTTTTTTTTTTTNTTTTTTT
TTTTNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_p11.b1 MSMg01no343_p11.b1 CHROMAT_FILE:
MSMg01no343_p11.b1 PHD_FILE: MSMg01no343_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:00 2005
         (378 letters)



>mm_chr4_24809080_24809856
          Length = 777

 Score =  601 bits (311), Expect = e-176
 Identities = 356/371 (95%), Gaps = 3/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatatctctcacagacttgcttgttatgaaagaaggaacatcttttgataac 64
           |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattcttcacatc-cttacagacttgcttgttatgaaagaaggaacatcttttgataac 515

                                                                       
Query: 65  agttttggttttaatagcagtgaggtaattttgctctgctcataacagttaaatcaacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agttttggttttaatagcagtgaggtaattttgctctgctcataacagttaaatcaacac 455

                                                                       
Query: 125 agcaactctctgtatcttggtctttgcaaaggaaatttttggtaaggagaaatactatga 184
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 454 agcaactctctgtatcttgttctttgcaaaggaaatttttggcaaggagaaatactatga 395

                                                                       
Query: 185 gaagcaaatattcaagaactactttttatttaaaacatcataaaagcatggaatttacat 244
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 394 gaagcaaacattcaagaactactttttatttaaaacaccataaaagcatggaatttacat 335

                                                                       
Query: 245 tccaggaattctagaagagctttgaaaagtcaaactgtgttgttcacactgtgtatctgt 304
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 334 tccagaaattctagaagagctttgaaaagccaaactgtgttgttcacactgtgtatctgt 275

                                                                       
Query: 305 ctttgaaca-tgtaatcctttctttctactcttgttgtctctgtggttctttgtgtatca 363
           ||| ||| | ||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct: 274 cttcgaa-agtgtaatcctttctctctactcttgttgtctctgtggttgtttgtgtagca 216

                      
Query: 364 tccaaggcata 374
           |||||||||||
Sbjct: 215 tccaaggcata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 777
Length adjustment: 9
Effective length of query: 369
Effective length of database: 768
Effective search space:   283392
Effective search space used:   283392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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