Query= MSMg01no344_a16.b1 MSMg01no344_a16.b1 CHROMAT_FILE:
MSMg01no344_a16.b1 PHD_FILE: MSMg01no344_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:06 2005
(277 letters)
>mm_chr4_127536454_127537130
Length = 677
Score = 484 bits (250), Expect = e-141
Identities = 268/274 (97%)
Strand = Plus / Minus
Query: 4 ggaattccactgaataccgggcaacattaccgaagcaggggcactggtgttaaaaatcag 63
||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggaattccagtgaagactgtgcaacattaccgaagcaggggcactggtgttaaaaatcag 418
Query: 64 aggctaggaaggacccgttgccgtgtggaaggagccagagcaagggtggaaatgtgttcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aggctaggaaggacccgttgccgtgtggaaggagccagagcaagggtggaaatgtgttcc 358
Query: 124 agcttcctggggctcatgatgccccaggcgagagaaggagcaagctagccagcaagagag 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 357 agcttcctggggctcatgatgccccaggcgagagtaggagcaagctagccagcaagagag 298
Query: 184 tcaacaagagctgagtctatgtccttgccaaaagcgtggttgttgtggtgacagaaatgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcaacaagagctgagtctatgtccttgccaaaagcgtggttgttgtggtgacagaaatgc 238
Query: 244 catgtgaaaggccgtaaaacaagatgtccctgtg 277
||||||||||||| ||||||||||||||||||||
Sbjct: 237 catgtgaaaggccataaaacaagatgtccctgtg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no344_a16.g1 MSMg01no344_a16.g1 CHROMAT_FILE:
MSMg01no344_a16.g1 PHD_FILE: MSMg01no344_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:06 2005
(522 letters)
>mm_chr4_127398978_127399899
Length = 922
Score = 969 bits (501), Expect = 0.0
Identities = 518/525 (98%), Gaps = 3/525 (0%)
Strand = Plus / Plus
Query: 1 aatgaaaatgaaggaacaacatacctagacttgtgggatacaacaaaagcagtgctaaga 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 198 aatgaaaatgaaggaacaacatacctagacttgtgggatacaacgaaagcagtgctaaga 257
Query: 61 ggaaagttcatagcactaagtacttccataaagaaattggagagatctcacgctagcaat 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 258 ggaaagttcatagcactaagtactgccataaagaaattggagagatctcacgctagcaat 317
Query: 121 ttaaaagtgcatctggaagatctagat---aaaaaaaaaaggcaaacacacccaagagga 177
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 318 ttaaaagtgcatctggaagatctagattaaaaaaaaaaaaggcaaacacacccaagagga 377
Query: 178 gtagaaggcaggaaataatcaaactcatggcggaaatcaatcaattagaaacaaagaaag 237
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 gtagaaggcaggaaataatcaaactcatggcagaaatcaatcaattagaaacaaagaaag 437
Query: 238 cagtacaaagaactaacaaaaccaagggctggttctttgagaaaatcaacaagctagaca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagtacaaagaactaacaaaaccaagggctggttctttgagaaaatcaacaagctagaca 497
Query: 298 aaccactctcaccaatggacagattttagccactgtcagcacagatctttggaaatgtag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaccactctcaccaatggacagattttagccactgtcagcacagatctttggaaatgtag 557
Query: 358 gcaggaccattagttgtgtactagatcccagctctgaaattgttatctgtggggagctgc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcaggaccattagttgtgtactagatcccagctctgaaattgttatctgtggggagctgc 617
Query: 418 actacaagtttagaatgtatgtggatcaatttaatgcttgcccgcaaaatcccacactaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 actacaagtttagaatgtatgtggatcaatttaatgcttgcccgcaaaatcccacactaa 677
Query: 478 ctacaattaggggagaatagagaagcccacgggagctagggaaac 522
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 678 ctacaattaggggagaaaagagaagcccacgggagctagggaaac 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
