BAC Information

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BAC

Clone NameMSMg01-344B18
Chromosome4 (Build37)
Map Location 147,401,890 - 147,572,916
singlet/doubletdoublet
Overlap geneClcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
Upstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa
Downstream genePtchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344B18.T7 (MSMg01no344_b18.b1)MSMg01-344B18.TJ (MSMg01no344_b18.g1)
ACCAG457253AG457254
length774746
length of high quality
(start - end)		501 (53 - 553)504 (70 - 573)
definitionCHROMAT_FILE: MSMg01no344_b18.b1 PHD_FILE: MSMg01no344_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:11 2005CHROMAT_FILE: MSMg01no344_b18.g1 PHD_FILE: MSMg01no344_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,572,469 - 147,572,916)(147,401,890 - 147,402,391)
sequence
NNTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACCAGTTTCCTTCCCTCAATGAGCCAGCCTCTTGGCCC
ATCTACTCGGTGATTTCTTGTAAAACATAAAAATTATGGTAAAGGGGGAG
AATGCCCTTTGCCGGCAGATTTTCCAGCCCCTGAGTGTATCTGGCCATTT
AATCAAGGGAAGGCAAACAGTACAGAGTCAGGAAGACACTATAGGTCTCT
CCTGATGTTCCACCAGCCTCAGGCACAGGAGGCTCATTTGCCTCTATATA
CTTCCTTCAAATAACCACATAGCTGTACCTCAACCTCCTGGGTCTGTATT
CAGATGCCCTCTATTTAAGAGGCCCGTGACCTTTAAGGAACATCCCAGGT
ACCCCTCCACATATGGATGGATAGATAGATACATAGATAGATACATAGAT
GCATAGATAGATACATGGATAGATACATAGGTAGATACATAGATAGTAGA
TAGGTAGGTGATAGATTTAGATATGGATACAGGTATAGATATATTTAGAC
AAGGTTTTACTGTATAACCCTGGTTGACCTGGAACCCACTGTATAAACAA
AGCTGTCCTTAATCTCGCAAAGAACCTCCTGACTCTGAGACTTCTATTGG
CTATGGCTTCTCCGGTTCACTTTTGCCCCCGAAAAAGGATAGGGGTACCT
GCCCGAAAGGGCTCCTTTAATGGTTGGCTATGGATTTATATTTTCCTGGA
TACTCCCCCGCTTTATTACTCTTG

ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCACAGTAACTCTCATGAGTACAATGTGAA
CGGGAAATGACTGTCACTTGGGGCCGTGTGACATGATATATACGTATACA
CTACCTAGATATGCGACTGAGAGTTAAGCCTAAGACTTGTGGCCAAGTCC
TGAGAAAGGCAGTAGGGAGGTTGAGCCCCTCTCTGCCAGTTTATTGACAA
AAGTCAGACTTGGCATGTGTCTTCCGGCTGGCTGCCGACTTTCCCAGCCT
CCCTTTTTGGTTTAGAGATGATGAGGCCACAGTTATGGCACCAGACATAA
CTGTTATCATGATCTTTGGTGCTGTGTCCAGCTTTCCCTGTGTGTGATCC
GTCTGTGAACCTGGCGAATCCAGGAGCCCTGTCCACTCTGGCATAGCCCT
TCATCTACCACTGCCAACAAGGTGGGCGTGACAGTGTGACCTCAACATCC
ATCGGGCTCTGTCTGCCATGTGCTACCGCCACCAGAAAGAAGGACTGGCT
CACTCAGTAGAGTTCTGACCAAGCAGCCCTGGAGTGCTGGGCGAGCGCAA
AGTCTGTGACTGTGACTCACTTCTGTAGTACCCAAAGCAAATGCCAAGTC
ACATGAAAACCCGGGCCAGGAAAATTATTTTCAAAAAAGAAAAAGAAAAA
GGCGTCTTGAAAAAAGAGAAAATTATTCCAATGTGTAAAAGTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_b18.b1 MSMg01no344_b18.b1 CHROMAT_FILE:
MSMg01no344_b18.b1 PHD_FILE: MSMg01no344_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:11 2005
         (501 letters)



>mm_chr4_147572469_147573369
          Length = 901

 Score =  851 bits (440), Expect = 0.0
 Identities = 446/448 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccagtttccttccctcaatgagccagcctcttggcccatctactcggtgattt 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattcaccagtctctttccctcaatgagccagcctcttggcccatctactcggtgattt 389

                                                                       
Query: 65  cttgtaaaacataaaaattatggtaaagggggagaatgccctttgccggcagattttcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttgtaaaacataaaaattatggtaaagggggagaatgccctttgccggcagattttcca 329

                                                                       
Query: 125 gcccctgagtgtatctggccatttaatcaagggaaggcaaacagtacagagtcaggaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcccctgagtgtatctggccatttaatcaagggaaggcaaacagtacagagtcaggaaga 269

                                                                       
Query: 185 cactataggtctctcctgatgttccaccagcctcaggcacaggaggctcatttgcctcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cactataggtctctcctgatgttccaccagcctcaggcacaggaggctcatttgcctcta 209

                                                                       
Query: 245 tatacttccttcaaataaccacatagctgtacctcaacctcctgggtctgtattcagatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tatacttccttcaaataaccacatagctgtacctcaacctcctgggtctgtattcagatg 149

                                                                       
Query: 305 ccctctatttaagaggcccgtgacctttaaggaacatcccaggtacccctccacatatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ccctctatttaagaggcccgtgacctttaaggaacatcccaggtacccctccacatatgg 89

                                                                       
Query: 365 atggatagatagatacatagatagatacatagatgcatagatagatacatggatagatac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  atggatagatagatacatagatagatacatagatgcatagatagatacatggatagatac 29

                                       
Query: 425 ataggtagatacatagatagtagatagg 452
           ||||||||||||||||||||||||||||
Sbjct: 28  ataggtagatacatagatagtagatagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_b18.g1 MSMg01no344_b18.g1 CHROMAT_FILE:
MSMg01no344_b18.g1 PHD_FILE: MSMg01no344_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:11 2005
         (504 letters)



>mm_chr4_147401690_147402593
          Length = 904

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacagtaactctcatgagtacaatgtgaacgggaaatgactgtcacttggggccgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accacagtaactctcatgagtacaatgtgaacgggaaatgactgtcacttggggccgtgt 260

                                                                       
Query: 61  gacatgatatatacgtatacactacctagatatgcgactgagagttaagcctaagacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatgatatatacgtatacactacctagatatgcgactgagagttaagcctaagacttg 320

                                                                       
Query: 121 tggccaagtcctgagaaaggcagtagggaggttgagcccctctctgccagtttattgaca 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccaagtcctgagaaaggcagtaaggaggttgagcccctctctgccagtttattgaca 380

                                                                       
Query: 181 aaagtcagacttggcatgtgtcttccggctggctgccgactttcccagcctccctttttg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aaagtcggacttggcatgtgtcttccggctggctgccgactttcccagcttccctttttg 440

                                                                       
Query: 241 gtttagagatgatgaggccacagttatggcaccagacataactgttatcatgatctttgg 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gtttagagatgatgaggccacagttatggcaccagacataactgctatcatgatctttgg 500

                                                                       
Query: 301 tgctgtgtccagctttccctgtgtgtgatccgtctgtgaacctggcgaatccaggagccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctgtgtccagctttccctgtgtgtgatccgtctgtgaacctggcgaatccaggagccc 560

                                                                       
Query: 361 tgtccactctggcatagcccttcatctaccactgccaacaaggtgggcgtgacagtgtga 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtccactctggcatagcctttcatctaccactgccaacaaggtgggcgtgacagtgtga 620

                                                                       
Query: 421 cctcaacatccatcgggctctgtctgccatgtgctaccgccaccagaaagaaggactggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcaacatccatcgggctctgtctgccatgtgctaccgccaccagaaagaaggactggc 680

                                 
Query: 481 tcactcagtagagttctgacca 502
           ||||||||||||||||||||||
Sbjct: 681 tcactcagtagagttctgacca 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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