Query= MSMg01no344_g02.b1 MSMg01no344_g02.b1 CHROMAT_FILE:
MSMg01no344_g02.b1 PHD_FILE: MSMg01no344_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:32 2005
(346 letters)
>mm_chr4_93496927_93497673
Length = 747
Score = 534 bits (276), Expect = e-156
Identities = 334/364 (91%), Gaps = 18/364 (4%)
Strand = Plus / Minus
Query: 1 tccttctagtctcttggaagcctgcctgactgttcctctggggacagtgtcacaactctg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 689 tccttctagtctcttggaagcctgcctgactgtttctctggggacagtgtcacaactctg 630
Query: 61 tgttattttcaaattccacagttgcaattagaagagaactcaaaacataaaaatgtgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgttattttcaaattccacagttgcaattagaagagaactcaaaacataaaaatgtgggg 570
Query: 121 ---ttttttttg---------------tttgtttgtttgttttgtagagcacttgtttcc 162
||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 569 tttttttttttgttgttgtttgtttgttttgtttgtttgttttgtagagcatttgtttcc 510
Query: 163 ttcctgatcaatgtgcagaatatgttttttaaaccaatctttattttttcctcatgtttt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 509 ttcctgatcaatgtgcagaatatgttttttaaaccaatctttattttttccttatgtttt 450
Query: 223 tcttctaaattttaatgaacactacctgtatttttaatcaaagtttatttatttatttct 282
|||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||
Sbjct: 449 tcttctaaattttaatgaacacaacctgtaaagttaatcaaggttaatttatttatttct 390
Query: 283 accaaatgtgctggaaattgggagaggaaccagcaagattcagttaatattggcaagaac 342
|||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 389 accaaatgtgctagaaattgggagaggaatcagcaaggttcagttaatattggcaagaac 330
Query: 343 gaga 346
||||
Sbjct: 329 gaga 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space: 248706
Effective search space used: 248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_g02.g1 MSMg01no344_g02.g1 CHROMAT_FILE:
MSMg01no344_g02.g1 PHD_FILE: MSMg01no344_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:33 2005
(330 letters)
>mm_chr4_93271812_93272541
Length = 730
Score = 615 bits (318), Expect = e-180
Identities = 324/326 (99%), Gaps = 1/326 (0%)
Strand = Plus / Plus
Query: 1 caagggagagtgccagaaaactagttcacataatgaacagcttggatttctgttagtcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagggagagtgccagaaaactagttcacataatgaacagcttggatttctgttagtcca 260
Query: 61 agcaatatgattgcttttcaaattacttcaaggcagcagtaaatgtgaacttcatcaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaatatgattgcttttcaaattacttcaaggcagcagtaaatgtgaacttcatcaatt 320
Query: 121 cttttaaaaatggggctgggatgggatttacttcatgttgtaggatgcttagaatggcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttaaaaatggggctgggatgggatttacttcatgttgtaggatgcttagaatggcat 380
Query: 181 gtcgaaatcataagactgtgtgtagaagtcagttctttccacccactctgtaggtttcag 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgaaatcagaagactgtgtgtagaagtcagttctttccacccactctgtaggtttcag 440
Query: 241 agatggaacttaggttatcagccttggtagcaagttcccttaccagctgatccatctcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatggaacttaggttatcagccttggtagcaagttcccttaccagctgatccatctcat 500
Query: 301 tgtacccagtcttttatttttttttt 326
||||||||||||||| ||||||||||
Sbjct: 501 tgtacccagtctttt-tttttttttt 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
