Query= MSMg01no344_l15.b1 MSMg01no344_l15.b1 CHROMAT_FILE:
MSMg01no344_l15.b1 PHD_FILE: MSMg01no344_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:00 2005
(375 letters)
>mm_chr6_82823176_82823950
Length = 775
Score = 516 bits (267), Expect = e-151
Identities = 325/365 (89%), Gaps = 36/365 (9%)
Strand = Plus / Minus
Query: 1 gactttacttcttacttaatttctttgtctccagtgacccatatgattaagggatagaaa 60
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 665 gactttacttcttacttaatttc--tgtctccagtgacccatacgattaagggatagaaa 608
Query: 61 taatccaagatgcttgagttggtggctctttcctctcctaagcttccaaaaaaaaaaaaa 120
|||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taatccaagatgcttgagttggtggctctttcctctcct--------------------- 569
Query: 121 aaaaaaaaaaaaagctcagtgg--gcgcttattggatgaggcttctgttgttggtgctaa 178
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 568 -------aaaaaagctcagtgggcgcgcttattggatgaggcttctgttgttggtgctaa 516
Query: 179 aaatatttatttacattgctatttcccatgtatacctatttattatccaatatttggatt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaatatttatttacattgctatttcccatgtatacctatttattatccaatatttggatt 456
Query: 239 ataagataggtatttaca-tttttacataattatttagtgtgcagtcaacaacaacaaca 297
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
Sbjct: 455 ataagataggtatttacattttttacataattatttagtgtgcagt---caacaacaata 399
Query: 298 gcaaaaagaaataagaaaaggaattagaaaccaggtgtggtggtacacaccagcgttcaa 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 398 gcaaaaagaaataagaaaaggaattagaaaccaggtgtggaggtacacaccagtgttcaa 339
Query: 358 gggca 362
|||||
Sbjct: 338 gggca 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_l15.g1 MSMg01no344_l15.g1 CHROMAT_FILE:
MSMg01no344_l15.g1 PHD_FILE: MSMg01no344_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:00 2005
(499 letters)
>mm_chr4_85672045_85672943
Length = 899
Score = 704 bits (364), Expect = 0.0
Identities = 385/392 (98%), Gaps = 1/392 (0%)
Strand = Plus / Plus
Query: 1 tcagaagctttggattcttgctttgtttcgtggacgaagaagggaaaatcactgcggaca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tcagaagctttggattcttgctttgtttcgtggacaaagaagggaaaatcactgcggaca 260
Query: 61 ttctagaggtcaggctctgggtgaggtgcttcagaagggccactttgcagttctcacggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctagaggtcaggctctgggtgaggtgcttcagaagggccactttgcagttctcacggt 320
Query: 121 gaacttctgagcaactgggaagattcccttatatagatgaggaaatgagagctcacagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacttctgagcaactgggaagattcccttatatagatgaggaaatgagagctcacagag 380
Query: 181 attaacaaactcctacagcttggtatgcttactaaacagtggggtaggttttgaaattac 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaacaaactcctatagcttggtatgcttactaaacagtggggtaggttttgaaattac 440
Query: 241 tccttcctggttcgaaaatatgtgtccaacttagatgtgaatgaaagaaaaagaatgtgt 300
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ttcttcctggttcgaaaatatgtgtccaacttagatgtgaatgaaagaaaacgaatgtgt 500
Query: 301 agtatacacatgcaacaatctatcagtttgtcttgttctgaatctttgtattaaagaata 360
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtatacacatgcaacaatttttcagtttgtcttgttctgaatctttgtattaaagaata 560
Query: 361 aaaaaatatccactttgaagatttgccacaaa 392
|||||| |||||||||||||||||||||||||
Sbjct: 561 aaaaaa-atccactttgaagatttgccacaaa 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
