BAC Information

Click to search

BAC

Clone NameMSMg01-345H05
Chromosome4 (Build37)
Map Location 93,982,915 - 94,164,284
singlet/doubletdoublet
Overlap genenone
Upstream geneTusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345H05.T7 (MSMg01no345_h05.b1)MSMg01-345H05.TJ (MSMg01no345_h05.g1)
ACCAG458271AG458272
length759767
length of high quality
(start - end)		547 (51 - 597)512 (84 - 595)
definitionCHROMAT_FILE: MSMg01no345_h05.b1 PHD_FILE: MSMg01no345_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:54 2005CHROMAT_FILE: MSMg01no345_h05.g1 PHD_FILE: MSMg01no345_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,163,744 - 94,164,284)(93,982,915 - 93,983,426)
sequence
NNNNCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCTTTCTGCTGTCTCAGTTGAGATAGAGACTTGGCACATG
TCAGTTGTCTCCTTCCCCTGCTGTACAATGATGCTGTGCATCTTGTTATT
CACCCGGTCTGTCATATATTCCTGGTCCCTTTGCCACATCATGTCCACAA
ATATGGTAGTCAAGGTGATTTTTTCCCTCCATGTACTGATACCCTATGAA
GCTGTTGCCAGTAAGTGACCTCCAAGGCTATGCTGATGTCATGTTTCTAA
ACGTCAGAGGTATTCCTGAATGCACGCCTGCTGTGCCTTCTCTATGTCAG
TTGTATCCTAAATTCCTTTCATGGTCACTTGCCTTACTTCCAGTTGAGCA
ATGTTTTTGCTCACTAAGTTTATCCATAAATTCTATAAAGTTACTATAAT
TTTTAATGCCATAGTCAGCCTTACTACTGATATGATAGAGAAGGTCTCTG
AGTTAATTACATTTATTTCTTTGGATAGAAAATATAAGATAAGCCCATGT
TCAAGCATGTAGGGTCATGTTACACCAGTTTTAGGATAAAGGAATGGGAA
GAACTCCTCAGGGGTCAGTTTTTTTCTTCATATTCAAGAAAGGGTGGAAA
AAAAGCAATATACCTGGTTCCAAAATGGCTATAATCTCCCACACTGCAGA
ACATCATGTTTAATTAAGTTTGTACCCTCTTTCCCATTTTAAATTTGCCC
CTAAATTCC

TAAATTACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCTACAATAGAAGG
GAAATTTGTTTTTCTAACTGTTGCAGCTGGTTGGGTACTGTCCCTTCAAG
TTCTTTATAGTTACATTCCCAGGGAGACAGACACAGCTCTATTTATCATA
GGTCAGTTGAATCTAGATGATGAAGATGGATGTGCACTAGACACTTTACA
TTGAAATTCCCAGGTTTTTCCCCTGGGGAAATTGCCATCAAAACCTTCCT
AAAAGCAGTGGACCTTACAAGGAAGAGAAAGACATTGACTTGGCCCAGGT
AGCCAGAGAAGACAGGTGTGGTGAGTCACCCTGGATAGTGACATTCTTCA
GCTCCTCATGGCCTTCTATGCTTCAGACCTACCTGAAACCCTCTTTGTAT
ATAGTGAATGGAAACTTTCCTTGCTCTGTAGCATCAAGTGCAGACCAGAT
AGATCAGAAAGAAGAACAAGATCAAGACCTCAACATGACCAAGAAGGTCA
TGTTGTAATAAAGCAGTTCTGTGCAGTAATTACTTTATGAGCCTCCTCAG
GGTAGTTCATAAGATTGTGATTCTATGAGCTTACAGAGTTGACTCCCACT
CCAGTCACCAAAGAACAAGAAGCTCCCCTTACACCAATAGACCCTTGACG
CTTGAGAAATACCACATTTAAAATACCCGGGCCCATTGACCCCCATCCAT
TAAAAAAAGGGGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_h05.b1 MSMg01no345_h05.b1 CHROMAT_FILE:
MSMg01no345_h05.b1 PHD_FILE: MSMg01no345_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:54 2005
         (547 letters)



>mm_chr4_94163538_94164484
          Length = 947

 Score =  953 bits (493), Expect = 0.0
 Identities = 529/541 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctttctgctgtctcagttgagatagagacttggcacatgtcagttgtctccttcc 66
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 747 gaattctttctgctgtctcagttgagatagagacttggcacatgtcagttgtctcctttc 688

                                                                       
Query: 67  cctgctgtacaatgatgctgtgcatcttgttattcacccggtctgtcatatattcctggt 126
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 687 cctgctgtacaatgatgctgtgcatcttgttcttcacccggtctgtcatatattcctggt 628

                                                                       
Query: 127 ccctttgccacatcatgtccacaaatatggtagtcaaggtgattttttccctccatgtac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ccctttgccacatcatgtccacaaatatggtagtcaaggtgattttttccctccatgtac 568

                                                                       
Query: 187 tgataccctatgaagctgttgccagtaagtgacctccaaggctatgctgatgtcatgttt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 567 tgataccctatgaagctgttgccagtaagtgacctccaaggctatgctgatatcatgttt 508

                                                                       
Query: 247 ctaaacgtcagaggtattcctgaatgcacgcctgctgtgccttctctatgtcagttgtat 306
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 507 ctaaaagtcagaggtattcctgaattcacgcctgctgtgccttctctatgtcagttgtat 448

                                                                       
Query: 307 cctaaattcctttcatggtcacttgccttacttccagttgagcaatgtttttgctcacta 366
           |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct: 447 cctaaattcctttcatggtctcttgccttacttccagttgagcaatatttttgcttacta 388

                                                                       
Query: 367 agtttatccataaattctataaagttactataatttttaatgccatagtcagccttacta 426
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 387 agtttatccataaattctataaagttactataatttttaatcccatagtcagccttacta 328

                                                                       
Query: 427 ctgatatgatagagaaggtctctgagttaattacatttatttctttggatagaaaatata 486
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 327 ctgatatgatagagaaggtctctgagttaattacatttatttctttggatagaaaataca 268

                                                                       
Query: 487 agataagcccatgttcaagcatgtagggtcatgttacaccagttttaggataaaggaatg 546
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 267 agataagcccatgtccaagcatgtagggccatgttacaccagttttaggataaaggaatg 208

            
Query: 547 g 547
           |
Sbjct: 207 g 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_h05.g1 MSMg01no345_h05.g1 CHROMAT_FILE:
MSMg01no345_h05.g1 PHD_FILE: MSMg01no345_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:54 2005
         (512 letters)



>mm_chr4_93982715_93983626
          Length = 912

 Score =  967 bits (500), Expect = 0.0
 Identities = 509/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatctacaatagaagggaaatttgtttttctaactgttgcagctggttgggtactgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatctacaatagaagggaaatttgtttttctaactgttgcagctggttgggtactgtcc 260

                                                                       
Query: 61  cttcaagttctttatagttacattcccagggagacagacacagctctatttatcataggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcaagttctttatagttacattcccagggagacagacacagctctatttatcataggt 320

                                                                       
Query: 121 cagttgaatctagatgatgaagatggatgtgcactagacactttacattgaaattcccag 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttgaatctagatgatgaagagggatgtgcactagacactttacattgaaattcccag 380

                                                                       
Query: 181 gtttttcccctggggaaattgccatcaaaaccttcctaaaagcagtggaccttacaagga 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttttcccctagggaaattgccatcaaaaccttcctaaaagcagtggaccttacaagga 440

                                                                       
Query: 241 agagaaagacattgacttggcccaggtagccagagaagacaggtgtggtgagtcaccctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaaagacattgacttggcccaggtagccagagaagacaggtgtggtgagtcaccctg 500

                                                                       
Query: 301 gatagtgacattcttcagctcctcatggccttctatgcttcagacctacctgaaaccctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatagtgacattcttcagctcctcatggccttctatgcttcagacctacctgaaaccctc 560

                                                                       
Query: 361 tttgtatatagtgaatggaaactttccttgctctgtagcatcaagtgcagaccagataga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtatatagtgaatggaaactttccttgctctgtagcatcaagtgcagaccagataga 620

                                                                       
Query: 421 tcagaaagaagaacaagatcaagacctcaacatgaccaagaaggtcatgttgtaataaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagaaagaagaacaagatcaagacctcaacatgaccaagaaggtcatgttgtaataaag 680

                                           
Query: 481 cagttctgtgcagtaattactttatgagcctc 512
           |||||||||||| |||||||||||||||||||
Sbjct: 681 cagttctgtgcaataattactttatgagcctc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |