XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTATA
TCTTCGATGTTAGACCTCTATCAGATATAGGAATGGTAAAGGTCTTTTCT
CAATCTGTGGATTCCCATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATGCACCTTTTATCCTTCACAAAAATCAATTC
AGAGTGGATTGATGACCTCAGTTTAAAAACATGAAACTGCTACAAGAAGA
CGGGAAATATTCTTCATGTGAGAGGGATAGGCGAGAACTCTCTGAACATA
GTAGTACACATATCCCAGAGTCTAGCCTCAAGAATCAAAAATGGAACTAC
ATACATTTTAAAGAGTTCTGCACAAGAAAGCAGGGAAAACAGACACTCCA
CACAATATAAAAGTTTTACCAAAGACACCTCAAATGGACTGCTGTCAAAT
GTTAGGCGGCCATGGCTTTTCTAAGGTTTTTATGTTCTGTTTTGCTCTGC
CTCGCTTCGCTTCGNCCCACTTTTCGCTCCGTCCCCTGCCCCCTTCCCTT
TGTTTTCCCTTTCCTTCTTCCCTTCGTTAATCCTCCCTCCATTCTTTTTC
CGCCCCTCCTCTCTCCCTCCCCCTTTTTTTTCCCTTTTCTCCCCTCCCTT
TTCCCTCTTCCCCCTTCCCCCCCCCCCCCTCTCCCCTTTTCTTCCCCTTC
TCCCCTCCCCTCTTTCTTTTTTTCTCCCCCCTTCCCCCCCTCTCCCCTTT
CTCCCTTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCATATATTATTAGAATATAGGGAGTGCTATGCATGTAGTC
TGGCAAAATGCATGTGCATTTCTGATCATATGGAAAGAACATGGGAAAGA
ATAGTAGCAAATACAAAAGTTTTGTGAGTTGCCAACAGGTTAGAGGCAAA
AACATTAGAATCATTTGGAGAAAATATGTAGTTTAACTTTGTCCAAGTTT
ATGGAAGAAATGATATACAAAGTTGGGTTTGTTTTGACTGGAAGTGGACA
GGGTCCTTACTTTTAAGTGTACAGTAATAATTATAAAGAACACCTAACTA
TAATTCTGTCCTTGAGGATGCTTCCTTGGCTCCTGTACTGGAAAAAATTG
CAGGAAACTGGAATGAACAAAGAGTCTTTATTTTTAATGATTATTCTTCT
CTCATATATTACATCCAAACTGTAGTTTCTGCTCCCCCCTCTTCCTTAGC
TCTCCACTATCCTCTGCTTGCTTCTTCTGTCTCCTAAATTTATCCCCTTC
CATCAGAGAAGAGCAGTCCTCTCAGGAGCATGAACTAAATAGTATAACAG
GCAAAAATAAGACCAAGCACATACCATCATTTCTAGACTGGACTTGGTAA
TTCAGTAAAAGAAAAGAGGTCCACAAGTAGGTATAGAGTCTGGAACAGCC
CTCCTCCCACTGGTGAAATTTCACCATAAAAGGAAACTGTTCAGCC

Query= MSMg01no346_d18.g1 MSMg01no346_d18.g1 CHROMAT_FILE:
MSMg01no346_d18.g1 PHD_FILE: MSMg01no346_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:53 2005
         (569 letters)



>mm_chr4_77265115_77266082
          Length = 968

 Score =  938 bits (485), Expect = 0.0
 Identities = 548/569 (96%), Gaps = 1/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatattattagaatatagggagtgctatgcatgtagtctggcaaaatgcatgtgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 catatattattagaatatagggagtgctatgcatgtagtctggcaaaatgcatgtgcatt 522

                                                                       
Query: 61  tctgatcatatggaaagaacatgggaaagaatagtagcaaatacaaaagttttgtgagtt 120
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 521 tctgatcatatggaaa-aacatgggaaagaatagtagcaaatataaaagttttgtgagtt 463

                                                                       
Query: 121 gccaacaggttagaggcaaaaacattagaatcatttggagaaaatatgtagtttaacttt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 462 gccaacaggttagaggcaaaaatattagaatcatttggagaaaatatgtagtttaacttt 403

                                                                       
Query: 181 gtccaagtttatggaagaaatgatatacaaagttgggtttgttttgactggaagtggaca 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 402 gtccaagtttatggaagaaatgatatactaagttgggtttgttttgactggaagtggaca 343

                                                                       
Query: 241 gggtccttacttttaagtgtacagtaataattataaagaacacctaactataattctgtc 300
           ||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| |
Sbjct: 342 gggtccttacttttaagtgtacagtaccaattataaagagcacctaactataattctgcc 283

                                                                       
Query: 301 cttgaggatgcttccttggctcctgtactggaaaaaattgcaggaaactggaatgaacaa 360
           ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 282 cttgaggatgcttcgatggctcctgtactggaaaaatttgcaggaaactggaatgaacaa 223

                                                                       
Query: 361 agagtctttatttttaatgattattcttctctcatatattacatccaaactgtagtttct 420
           ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| 
Sbjct: 222 agagtctctatttttaatgattattcatctctcatatattatatccaaactgtagtttcg 163

                                                                       
Query: 421 gctcccccctcttccttagctctccactatcctctgcttgcttcttctgtctcctaaatt 480
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 162 gctcctccctcctccttagctctccactatcctctgcttgcttcttctgtctcttaaatc 103

                                                                       
Query: 481 tatccccttccatcagagaagagcagtcctctcaggagcatgaactaaatagtataacag 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 102 tatccccttccatcagagaagagcagtcctcccaggagcatgaactaaatagtataacag 43

                                        
Query: 541 gcaaaaataagaccaagcacataccatca 569
           ||||||||||||||| |||||||||||||
Sbjct: 42  gcaaaaataagaccaggcacataccatca 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space:   535522
Effective search space used:   535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)