Query= MSMg01no346_e15.b1 MSMg01no346_e15.b1 CHROMAT_FILE:
MSMg01no346_e15.b1 PHD_FILE: MSMg01no346_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:57 2005
(567 letters)
>mm_chr4_58506498_58507471
Length = 974
Score = 965 bits (499), Expect = 0.0
Identities = 549/569 (96%), Gaps = 11/569 (1%)
Strand = Plus / Plus
Query: 8 gaattcttaaa--t-tacctttataacttgtggagagtgggaagatttttttt-cccaaa 63
||||||||||| | || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 208 gaattcttaaaagtata--tttataacttgtggagagtgggaagatttttttttcccaaa 265
Query: 64 tgagaccaaaacactgaccaaacttaattgatcaaaaaattaagaacctagtactataaa 123
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 266 tgagaccaaaacactgaccaaatttaattgatcaaaaaattaagaacccagtactataaa 325
Query: 124 agaccttataatg----gttagaaaaaaaa-cttgtaggaagtttggcaatttacatata 178
||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |
Sbjct: 326 agaccttataatgaatggttaaaaaaaaaaacttgtaggaagtttggcaatttacataga 385
Query: 179 gaagattttctttacatcgaggagtaaagattccttaccgatcaaaaaggagaaaaactg 238
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 386 gaagattctctttacatcgaggagtaaagattccttaccaatcaaaaaggagaaaaactg 445
Query: 239 aacaatccaacagaggaaaacatgagcaaagatgtggacaggcgatccccaggagagaaa 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aacaatccaacagaagaaaacatgagcaaagatgtggacaggcgatccccaggagagaaa 505
Query: 299 actgtgacagccaaagccacgtgaaaactctcctcacagggcatcagaaggctgagcata 358
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 accgtgacagccaaagccacgtgaaaactctcctcacagggcatcagaaggctgagcata 565
Query: 359 atgtataggaaggtccaatagatttccatcccagcaaaaattagcaaatctaaaaatcac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atgtataggaaggtccaatagatttccatcccagcaaaaattagcaaatctaaaaatcac 625
Query: 419 agcctgatgaggatagccatacaatgctggagaaaactcagtacaaaagctttgaaatat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agcctgatgaggatagccatacaatgctggagaaaactcagtacaaaagctttgaaatat 685
Query: 479 ggtttcatgaaaccaactcatattcacatatcagacactgagtcctccggggaaatatct 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggtttcatgaaaccaactcaaattcacatatcagacactgagtcctccggggaaatatct 745
Query: 539 caagtgtgcctaaggagacgcaatattgt 567
|||||||||||||||||||||||||||||
Sbjct: 746 caagtgtgcctaaggagacgcaatattgt 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 974
Length adjustment: 10
Effective length of query: 557
Effective length of database: 964
Effective search space: 536948
Effective search space used: 536948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_e15.g1 MSMg01no346_e15.g1 CHROMAT_FILE:
MSMg01no346_e15.g1 PHD_FILE: MSMg01no346_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:57 2005
(594 letters)
>mm_chr4_58674347_58675340
Length = 994
Score = 1050 bits (543), Expect = 0.0
Identities = 558/563 (99%)
Strand = Plus / Minus
Query: 32 ctccctgaatgtcctctccagtctcattttacttatttatatattttggatatcatattt 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ctccctgaatgtcctctccagtctcattttacttatttatatattttggatatcatattt 935
Query: 92 tgtggttgtattttcacatttgaaaaatattcatccacataatgtgcctatttgtgtgat 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tgtggttgtattttcacatttgaaaaatattcatccacataatgtgcctatttgtgtgat 875
Query: 152 aaatgcatttttgacttccagtattttcaagttataatgagcttatcagaacagaactat 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 aaatgcatttttgacttccagtattttcaagttataatgagcttatcagaacagaactat 815
Query: 212 attgtaacaaggaacatttgtgtgtgagtctctctgtgtgtaattcatgtatatactgga 271
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 814 attgtaacaaggaacatttgtgtgtgagtccctctgtgtgtaattcatgtatatactgga 755
Query: 272 gggtttacaaagctacggaattcctgggccaagaaactgatactattaaattatgctgca 331
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ggatttacaaagctacggaattcctgggccaagaaactgatactattaaattatgctgca 695
Query: 332 gaaataggaaagggcggttagttctgcagtgcaaatccctcacagcagtgtggaaactga 391
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gaaataggaaagggtggttagttctgcagtgcaaatccctcacagcagtgtggaaactga 635
Query: 392 catgcctgcagagcacagatggtgttcctcggttgtcttctgtacaacggttgagaagta 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 catgcctgcagagcacagatggtgttcctcggttgtcttctgtacaacggttgagaagta 575
Query: 452 tcacactgcagctgtcttaatagcccctatctgtcatgagaggctagattctagccatgt 511
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 574 tcacactgcagctgtcttaatagcccctatctgtcatgagaggctaaattctagccatgt 515
Query: 512 gcttaccagagcttctttcttacacagattgtctatttccttaagtattgttcctcatgc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gcttaccagagcttctttcttacacagattgtctatttccttaagtattgttcctcatgc 455
Query: 572 ctgcttcccttcatccactgcct 594
|||||||||| ||||||||||||
Sbjct: 454 ctgcttccctgcatccactgcct 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
