Query= MSMg01no346_f07.b1 MSMg01no346_f07.b1 CHROMAT_FILE:
MSMg01no346_f07.b1 PHD_FILE: MSMg01no346_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:00 2005
(525 letters)
>mm_chr4_66012786_66013711
Length = 926
Score = 986 bits (510), Expect = 0.0
Identities = 522/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 1 caaacagtaccagcccaataatcacaatcaagagatgtaaatctatgaccagatgaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caaacagtaccagcccaataatcacaatcaagagatgtaaatctatgaccagatgaacag 498
Query: 61 tcatatggtaaagccaaattttgagataggtataaaacagtatcagtagacacagaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcatatggtaaagccaaattttgagataggtataaaacagtatcagtagacacagaaata 438
Query: 121 gacacaggacacctatcttgggcttttattgaccttagacagtttgtttcaggtcaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gacacaggacacctatcttgggcttttattgaccttagacagtttgtttcaggtcaagga 378
Query: 181 agtacttctttctgagtctcttctatctcctttatcaaatagaaagttaaggtttgtaac 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 377 agtacttctttctgagtctcttctatcccctttatcaaatagaaagttaaggtttgtaac 318
Query: 241 cctactagtgactccccaacttagcatcctaaatctacttctgtgccatcagattttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cctactagtgactccccaacttagcatcctaaatctacttctgtgccatcagattttcta 258
Query: 301 tggacatcatgacagcaatgacaaaattttgt-aaaaaacatttggagcccccagaactt 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 257 tggacatcatgacagcaatgacaaaattttgtaaaaaaacatttggagcccccagaactt 198
Query: 360 agagcttcaggtattagcttactaatcatcataccagctctatgggataaatgcaatgaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agagcttcaggtattagcttactaatcatcataccagctctatgggataaatgcaatgaa 138
Query: 420 tattgtcactccctatgtctataccttggagaggaagaggtttctatagttgctgaaggt 479
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tattgtcactccctatgcctacaccttggagaggaagaggtttctatagttgctgaaggt 78
Query: 480 cacacagcttctaccagtgaatctaggattcagactcagtttggca 525
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 cacacagcttctaccagtgaatctaggattcagactcagtttggca 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 926
Length adjustment: 10
Effective length of query: 515
Effective length of database: 916
Effective search space: 471740
Effective search space used: 471740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_f07.g1 MSMg01no346_f07.g1 CHROMAT_FILE:
MSMg01no346_f07.g1 PHD_FILE: MSMg01no346_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:00 2005
(426 letters)
>mm_chr4_65948475_65949300
Length = 826
Score = 627 bits (324), Expect = 0.0
Identities = 360/372 (96%), Gaps = 2/372 (0%)
Strand = Plus / Plus
Query: 55 ctggattcatgctccattggttagtcactgtaaagacttggagcagttaccattcctctg 114
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctggattcatgcttcattggttagtcactgtaaagacttggagcagttaccattcctctg 314
Query: 115 ccttcctatctgtaagaatgctagctggctgcttaagagtaagaaagagtcctatgctct 174
||||| |||| |||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 315 acttcccatctctaagaatgctagctggctgcttaagagtaagaaagattcctatcctct 374
Query: 175 ggaaggcactctgtcctcatcagctattgctgaggcataaagaaaaagcaattcacctgc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggaaggcactctgtcctcatcagctattgctgaggcataaagaaaaagcaattcacctgc 434
Query: 235 ataagacttctcttttactgctaacgtattaagtagattgttttcccctatgcaagtgaa 294
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 435 ataagacttctcttt-actgctaacgtattaagtagattgttttcccctatgcatgtgaa 493
Query: 295 aatttggcaagactggtagagaagatgaatgcatgtaggtcattttcatcagattaatag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aatttggcaagactggtagagaagatgaatgcatgtaggtcattttcatcagattaatag 553
Query: 355 atagaaaaacccaaaattaggaaatgtggggtcttcccttccttttagtccctttt-gtt 413
||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||
Sbjct: 554 atagaaaaacccaaaattaggaaatgtggtgtctttccttccttttagcccctttttgtt 613
Query: 414 aatgacaagagg 425
||||||||||||
Sbjct: 614 aatgacaagagg 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
