BAC Information

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BAC

Clone NameMSMg01-346G02
Chromosome4 (Build37)
Map Location 134,018,201 - 134,150,908
singlet/doubletdoublet
Overlap geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
Upstream gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346G02.T7 (MSMg01no346_g02.b1)MSMg01-346G02.TJ (MSMg01no346_g02.g1)
ACCAG458981AG458982
length589559
length of high quality
(start - end)		193 (50 - 242)197 (83 - 279)
definitionCHROMAT_FILE: MSMg01no346_g02.b1 PHD_FILE: MSMg01no346_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:03 2005CHROMAT_FILE: MSMg01no346_g02.g1 PHD_FILE: MSMg01no346_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,150,757 - 134,150,908)(134,018,201 - 134,018,396)
sequence
CGGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTACCCTTGCTACCCCAGCCACTGTGAATTCTTACCCATGC
TACCCCAGCCACTGTGAATTCTTACCCATGCTACCCCAGCCACTGTGAAT
TCTTACCCATGCTACCCCAGCCACTGTGAATTCTTACGCATGCTACCCCA
GCCACTGTGAATTCGTGTGTGCAATGGCCCTGTCATGTCCGGCAAATTGT
TTTGCTATGGACATCTGCTCTGTCTGGGTTCTTATANGGAATTTCCAAGC
TCTTTTCTTCCCAAAATGAACCCCTGGAACCTTTTGTGTGGCAAGGTTTA
AATTCGAACGGTCCTTAAAACCTTTTCCCGGGGAAATTAAAATTTTGCCT
CCATTTTCTCCTTGGGGTTAACCCACCCCCTCTCCTATTTTTACTCCCTA
CCCTTTTAAACATTTAAATTTTTAAATTTTTATAAATTTTAACACTCCCA
ATCTCTTCATAACTCCAACCCCTCCCCCAATTTTTTTTTTTATTTATCCT
CCTTATATTCCCTAACTGGTCTCTAATTCTCCCCAAACA

TTGTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACACCAAGTGGTAAGT
GCTGAGTTGGTACCACTTCCAGGGCAGGCAATTGGCACTATCCGAATACT
AGAAGGGATTGTCCNTTTGACCCTAAAATACCAGTCTTTTGCAGATAGGT
TCACCTATGTGGGAAATGCCAGGTGGACAGGGTCCTTGGCCACAGAATTG
TTTGAAATGGCAAGTTGCTAGGGATGACCTGGGGGGCTCGGGAGTGGAGA
ATGGTTTACCTAGGTCCTGCGGCTAACCCTAATTGAAATATCATGGCACT
TGGCAAAATGTTCGGAACCCGGGGGGTAGAACCTCCGGACTTTACTCCCG
GGGGGAAAATCTTAACCCCATTTTACTCCCGCCCATATAAAACGCCCCGG
GGCAAAAATATAATTTGGGTTGGGTCTCCGGGGCTGGTGGAAATACGCGG
TCTCCGTGGGGAGACCCCCCTCTTTTTCCTTTTTTACCCCCTTTTCCCCC
TTCTAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_g02.b1 MSMg01no346_g02.b1 CHROMAT_FILE:
MSMg01no346_g02.b1 PHD_FILE: MSMg01no346_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:03 2005
         (193 letters)



>mm_chr4_134150577_134151169
          Length = 593

 Score =  271 bits (140), Expect = 2e-77
 Identities = 149/152 (98%)
 Strand = Plus / Minus

                                                                       
Query: 39  ttcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactgtg 98
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 332 ttcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtg 273

                                                                       
Query: 99  aattcttacccatgctaccccagccactgtgaattcttacgcatgctaccccagccactg 158
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aattcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactg 213

                                           
Query: 159 tgaattcgtgtgtgcaatggccctgtcatgtc 190
           ||||||||||||||||||||||||||||||||
Sbjct: 212 tgaattcgtgtgtgcaatggccctgtcatgtc 181



 Score =  207 bits (107), Expect = 3e-58
 Identities = 122/127 (96%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcttacccttgctaccccagccactgtgaattcttacccatgctaccccagccactgtg 67
           ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 332 ttcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtg 273

                                                                       
Query: 68  aattcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactg 127
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 272 aattcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactg 213

                  
Query: 128 tgaattc 134
           |||||||
Sbjct: 212 tgaattc 206



 Score =  161 bits (83), Expect = 3e-44
 Identities = 95/99 (95%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacccttgctaccccagccactgtgaattcttacccatgctaccccagccact 64
           |||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 304 gaattcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccact 245

                                                  
Query: 65  gtgaattcttacccatgctaccccagccactgtgaattc 103
           |||||||||||| ||||||||||||||||||||||||||
Sbjct: 244 gtgaattcttacgcatgctaccccagccactgtgaattc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no346_g02.g1 MSMg01no346_g02.g1 CHROMAT_FILE:
MSMg01no346_g02.g1 PHD_FILE: MSMg01no346_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:04 2005
         (197 letters)



>mm_chr4_134018001_134018596
          Length = 596

 Score =  373 bits (193), Expect = e-108
 Identities = 196/197 (99%), Gaps = 1/197 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaccaagtggtaagtgctgagttggtaccacttccagggcaggcaattggcactatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaccaagtggtaagtgctgagttggtaccacttccagggcaggcaattggcactatc 260

                                                                       
Query: 61  cgaatactagaagggattgtccntttgaccctaaaataccagtcttttgcagataggttc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaatactagaagggattgtcc-tttgaccctaaaataccagtcttttgcagataggttc 319

                                                                       
Query: 121 acctatgtgggaaatgccaggtggacagggtccttggccacagaattgtttgaaatggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acctatgtgggaaatgccaggtggacagggtccttggccacagaattgtttgaaatggca 379

                            
Query: 181 agttgctagggatgacc 197
           |||||||||||||||||
Sbjct: 380 agttgctagggatgacc 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 596
Length adjustment: 8
Effective length of query: 189
Effective length of database: 588
Effective search space:   111132
Effective search space used:   111132
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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