XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCT
GACAAATGGAGATTCTCCACAGATACTTAAAAGAACAGCCAAGTTACACT
CATACAAGAATTTATCAGGCCTAGGAAATAGGGGGGTTGTGGTATTGCAT
TATTCATGAGAAGGTGTGCTAGAGCAGAACTCCCTGGTGCTAGCTTTCAC
AAGGCTCAAAGGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACA
GTCAATACCTGATCCTAAGCAGGGCTGTTTTTTTTAATTAAGTATTTTCT
TCATTTACATTTCCAATGCTATCCCAAAAGTCCCCACACCCTCCCCTCCC
CACTCTGCCCTCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTA
CTGAGGCATATAACGTTTTCATGACCGTTGGGCATCTCTTTCCACTGATG
GCCAACTACGCCATCTTTTGGTACATATGCAGCTAGAGATAGGAGCAGAG
CTGTTTTATCTTTACTGTAAACATTTACCTGTCCTGAAAGNCCTTTTGTA
GGCATTCCTTTGTTTTGGGGCACGGAACTTCCATGTACTTTGCCTGGTGC
GGCATCCCAATACTTTGTTTTCTGGAATATAAAAAACCGTTGTCCCTCTT
TTGAAAATAAAAAACGATCCCACCCCCCCCCCTGTGTGTTTATTGTTGGG
CGTCCGCCTATTTTCTGTCCCCTCTGGCTATCAATCTCTCCTCTG

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCTTTTGTGTCTTTAAGATGTACCAGGTATTC
TTTAAGATGTACCAGGTATTGAGACTGGGCCAAATTATACACCCTGTGAA
GACTTGTTATCCAAGTTTTAGGGTGCTCTTTCAGCCTAGCTAACTACTGT
TCCTCTTTGCTTAATGGGATTAACTGATTTTTTTCTGATTTCAAGATTAT
TGTCATATATCACTAACTATATGAAACTTCCTTGAATGAATGATCATCAC
TTAAAGTTTCTTGTTTGAGTTTCTACAATCCTTCCCTTTATATGTATAGG
TCTAGAATTCAAAAGGCATTCAACACAGCTTTTCATTCTGTCCTCAGGAT
ACGGCAGGTAGGGGTCCGATTTTGTTTTATTTCTTCCATAGGTGAAGCAA
CTCTTGATAGTACTTGAGTAATACCAAATACAGTCAATCAGGCAAACAAA
GATTTTCCTTGTGGGTTAACATGCCCAGCCCTGTCCTAAGTTTCAGGCTT
GTAGAATCATTTGGCCAGATATTCAGGGTAGGTGAAGGGTGTTGGCATTT
AGTTTCTCTTATCTCAATCTGACTCTGGAGTGCTTTATGGTTTGANAAAA
GTTTTGAAACCTTATTANAAACACAGGTGAAAACAGTTGCTACTTTTAAA
TGGACCAAAGACCTGACTTAAGAATCAACAACTTCGGC

Query= MSMg01no346_i06.g1 MSMg01no346_i06.g1 CHROMAT_FILE:
MSMg01no346_i06.g1 PHD_FILE: MSMg01no346_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:14 2005
         (540 letters)



>mm_chr4_113671989_113672928
          Length = 940

 Score =  946 bits (489), Expect = 0.0
 Identities = 528/541 (97%), Gaps = 2/541 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttttgtgtctttaagatgtaccaggtattctttaagatgtaccaggtattgagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttcttttgtgtctttaagatgtaccaggtattctttaagatgtaccaggtattgagact 681

                                                                       
Query: 61  gggccaaattatacaccctgtgaagacttgttatccaagttttagggtgctctttcagcc 120
           |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 680 gggccaaattataggccctgtgaagacttgtta-ccaagttttagggtgctctttcagcc 622

                                                                       
Query: 121 tagctaactactgttcctctttgcttaatgggattaactga-tttttttctgatttcaag 179
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 tagctaactactgtgcctctttgcttaatgggattaactgattttttttctgatttcaag 562

                                                                       
Query: 180 attattgtcatatatcactaactatatgaaacttccttgaatgaatgatcatcacttaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attattgtcatatatcactaactatatgaaacttccttgaatgaatgatcatcacttaaa 502

                                                                       
Query: 240 gtttcttgtttgagtttctacaatccttccctttatatgtataggtctagaattcaaaag 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 501 gtttcttgtttgagtttctacaatcctttcctttatatgtataggtctagaattcaaaat 442

                                                                       
Query: 300 gcattcaacacagcttttcattctgtcctcaggatacggcaggtaggggtccgattttgt 359
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 441 gcattcaacacagcttttcattctgtcctcagtatacggcaagtaggggtccgattttgt 382

                                                                       
Query: 360 tttatttcttccataggtgaagcaactcttgatagtacttgagtaataccaaatacagtc 419
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tttatttcttccataggtgaggcaactcttgatagtacttgagtaatgccaaatacagtc 322

                                                                       
Query: 420 aatcaggcaaacaaagattttccttgtgggttaacatgcccagccctgtcctaagtttca 479
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 321 aatcaggcaaacaaagattttccttgtgggttaacatgcccagcccagtcctaagattca 262

                                                                       
Query: 480 ggcttgtagaatcatttggccagatattcagggtaggtgaagggtgttggcatttagttt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttgtagaatcatttggccagatattcagggtaggtgaagggtgttggcatttagttt 202

            
Query: 540 c 540
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)