BAC Information

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BAC

Clone NameMSMg01-346L24
Chromosome4 (Build37)
Map Location 151,760,748 - 151,835,695
singlet/doubletdoublet
Overlap geneChd5, Kcnab2, LOC100042028
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22
Downstream geneNphp4, LOC667039, Gm833, LOC100042089, Ajap1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346L24.T7 (MSMg01no346_l24.b1)MSMg01-346L24.TJ (MSMg01no346_l24.g1)
ACCAG459261AG459262
length768789
length of high quality
(start - end)		466 (35 - 500)425 (65 - 489)
definitionCHROMAT_FILE: MSMg01no346_l24.b1 PHD_FILE: MSMg01no346_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:31 2005CHROMAT_FILE: MSMg01no346_l24.g1 PHD_FILE: MSMg01no346_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,835,258 - 151,835,695)(151,760,748 - 151,761,172)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTTG
TGCCCTGGGGTTCCACTCTGCCGGGTGCATGCTTTCCCCTGAGAATTCTG
GGAATGAGGCCATGAGGCCTGTGGTCACCAGGGAAAATTCCCTGGCCCTG
GAAAGTGTCCCTCACACTTAGGTGTCTTGATCTGGTAACTTGCAATGTGA
GTTTGAATCCTGGGTCCCACTTCTTGGTTTTCAGAGTCCCTTTATTCAAG
GTCACTTTCATTGTTTGTGTATTTGTTTTGAGAAAGGTGTAGCCCTGGCT
GACCTAGAATTCACGATGTAGACCAGGCTGGACTTGAACCCACAGAGCTC
TTTCTACCTCTGTCTCCAAAGTACTGGGAATAAAGGACTGTACCACCCTG
CAAAGCTTGTCAAAGTTAGTTTTTACAAACTATTCTGAAACAAAACTTGC
GATCCCTATAGAAAACCCAGTGTTACTTGCCTTCCGTAGATGGAAACTGA
GAATGTAAGTGTAAATTTTGAGACCCTTGCCAGCGAGACCAGGGGTACAC
GAGGTGAGGCATGTTCTGACACCCCAGCCTGGTGGGTCATGGGAACCCCC
AGTCAAGAACTCTGCTCTTTTTATGGAAATTCTGCCCCGTTACCTCAATA
CCCCCCAGATCCCTTTAAATAAATTTGAAAAGTGGGCGAAATTTAACCTT
GGTTTTAAAAAAAAAAACCGAAAAAAATGTTATACCCCCTTTGTTGGCGT
TTTCTTGTTTCCCCTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAGAAGTCACTAGTCCTGACGGCTCTCTCCAAGAC
CCGTCTGTTCCTGTAAGGTAGATCCCAAGCCAGAGGACCTGGGTAAGCTT
CCAGGCTGAGCCTATTGGTTGCTGGGACTCCAGCCAGCAATTAGGTGCAG
CTCACATCAAGTCCAGAGGCCAGGGCAAGGAGATGTTAATTCTGGGCCTC
TCTGATCATAACTGTGACCAGTGTGAATAGCCAGGTGCCGCTGGCCACCT
GGCCACCCACTCTTACAATCAACTGGTTTGCCTTTTACAGCCAAGCCACC
TGCCCAACCCCCGCGGGAGAGAAAAGCTACAGCCCTTTTAGGAGTTGGTG
CGGTGTTGGGGTACAAAAGGGAAACCATGAAATTCTATCACACGGAGGAC
AGGCCCAGGCTGGCTGCGCAAGAGTCCAGAAGTGCCACCTCATCGTAGTT
GAAGCCTTCTTCCGCACGGCATCCCATCTACAGCTACGCCTGGGAAGTCC
CTGGCGCCTTTTTCAGAGTGACTGACTTAAAGGAAAATTCCCTTTACCCG
TNAAATTTTTTTTTTGGGATTTTTCCTATTGAAGACGCAAAACTGGTTTG
GCTTTTTTAAAAAATTCGATGGACGGGGGGAAAATATTTAATTTCCGTTA
CCCCCCCGCGTGTTCCCCGCCTCCCCATCTATTGGGGATAGCTTTTTTGT
GCGCCCTTTGTGCCGTTTGCTCTATTTGCCCTACATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_l24.b1 MSMg01no346_l24.b1 CHROMAT_FILE:
MSMg01no346_l24.b1 PHD_FILE: MSMg01no346_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:31 2005
         (466 letters)



>mm_chr4_151835258_151836123
          Length = 866

 Score =  808 bits (418), Expect = 0.0
 Identities = 433/438 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtgccctggggttccactctgccgggtgcatgctttcccctgagaatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggaattcactttgtgccctggggttccactctgccgggtgcatgctttcccctgagaatt 379

                                                                       
Query: 64  ctgggaatgaggccatgaggcctgtggtcaccagggaaaattccctggccctggaaagtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctgggaatgaggccatgaggcctgtggtcaccagggaaaattccctggccctggaaagtg 319

                                                                       
Query: 124 tccctcacacttaggtgtcttgatctggtaacttgcaatgtgagtttgaatcctgggtcc 183
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 318 tccctcacacttaggtgtcttgatctggtaactcgcaatgtgagtttgaatcctgggtcc 259

                                                                       
Query: 184 cacttcttggttttcagagtccctttattcaaggtcactttcattgtttgtgtatttgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cacttcttggttttcagagtccctttattcaaggtcactttcattgtttgtgtatttgtt 199

                                                                       
Query: 244 ttgagaaaggtgtagccctggctgacctagaattcacgatgtagaccaggctggacttga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttgagaaaggtgtagccctggctgacctagaattcacgatgtagaccaggctggacttga 139

                                                                       
Query: 304 acccacagagctctttctacctctgtctccaaagtactgggaataaaggactgtaccacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct: 138 acccacagagctctttctacctctgtctccaaagtactgggaataaaggcctgcaacacc 79

                                                                       
Query: 364 ctgcaaagcttgtcaaagttagtttttacaaactattctgaaacaaaacttgcgatccct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  ctgcaaagcttgtcaaagttagtttttacaaactattctgaaacaaaacttgcgatccct 19

                             
Query: 424 atagaaaacccagtgtta 441
           |||| |||||||||||||
Sbjct: 18  atagcaaacccagtgtta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_l24.g1 MSMg01no346_l24.g1 CHROMAT_FILE:
MSMg01no346_l24.g1 PHD_FILE: MSMg01no346_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:31 2005
         (425 letters)



>mm_chr4_151760548_151761372
          Length = 825

 Score =  783 bits (405), Expect = 0.0
 Identities = 420/425 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaagtcactagtcctgacggctctctccaagacccgtctgttcctgtaaggtagatc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 agagaagtcactagtcctgacggctctcgccaagacccgtctgttcctgtaaggtagatc 260

                                                                       
Query: 61  ccaagccagaggacctgggtaagcttccaggctgagcctattggttgctgggactccagc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ccaagccagaggacctgggtaagcttccaggctgagcctattggatgctgggactccagc 320

                                                                       
Query: 121 cagcaattaggtgcagctcacatcaagtccagaggccagggcaaggagatgttaattctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 cagcaattaggtgcagctcacatcaagtccagaggccagggcaaggagatcttaattctg 380

                                                                       
Query: 181 ggcctctctgatcataactgtgaccagtgtgaatagccaggtgccgctggccacctggcc 240
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 381 ggcctctctgatcataactgtgaccagtgtgaacagccaggtgcctctggccacctggcc 440

                                                                       
Query: 241 acccactcttacaatcaactggtttgccttttacagccaagccacctgcccaacccccgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccactcttacaatcaactggtttgccttttacagccaagccacctgcccaacccccgc 500

                                                                       
Query: 301 gggagagaaaagctacagcccttttaggagttggtgcggtgttggggtacaaaagggaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggagagaaaagctacagcccttttaggagttggtgcggtgttggggtacaaaagggaaa 560

                                                                       
Query: 361 ccatgaaattctatcacacggaggacaggcccaggctggctgcgcaagagtccagaagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatgaaattctatcacacggaggacaggcccaggctggctgcgcaagagtccagaagtg 620

                
Query: 421 ccacc 425
           |||||
Sbjct: 621 ccacc 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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