Query= MSMg01no346_m22.b1 MSMg01no346_m22.b1 CHROMAT_FILE:
MSMg01no346_m22.b1 PHD_FILE: MSMg01no346_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:35 2005
(467 letters)
>mm_chr4_150700144_150701010
Length = 867
Score = 857 bits (443), Expect = 0.0
Identities = 458/463 (98%), Gaps = 2/463 (0%)
Strand = Plus / Plus
Query: 6 gaattcaacacaaatccacccagtgctggggaaatctgaccttcaaaacttcctgtcaac 65
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 206 gaattcaacacaaatccacccagtgctggggaaacctgaccttcaaaacttcctgtcaac 265
Query: 66 aatttttgaaacagaatactatttatacagcttaaaacaaatcattgtgtagccctatgc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatttttgaaacagaatactatttatacagcttaaaacaaatcattgtgtagccctatgc 325
Query: 126 gaaatcttcatgttccaatttagactctgtagtcattcccagagcttggctgtgttggca 185
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 326 gaaatcttcatgttccaatttagactctgtagtccttcccagagcttggctgtgttggca 385
Query: 186 agaatcgccatcagagagtgtttgaaaaacactgtattgctgtagaaattccaagtttgg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agaatcgccatcagagagtgtttgaaaaacactgtattgctgtagaaattccaagtttgg 445
Query: 246 gttacgcacaatcaacttataaatattacattcatgttccccggacccgaacagctgagc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttacgcacaatcaacttataaatattacattcatgttccccggacccgaacagctgagc 505
Query: 306 attaatctctcaagattagtagctaagtgtgcaggaatccaccacgcacaaataagaaac 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attaatctctcaagattagtagctaagtgtgcaggaatccaccacgcacaaataagaaac 565
Query: 366 ccacttccctgacacgtgtgggccacttaggaagcagccaaaaaaggtc-tgcatcatct 424
|||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 566 ccacttccctgacacgtgtgggccacttagaaagcagccaaaaa-ggtcctgcatcatct 624
Query: 425 tagcattaattttttatcagagcagcccaagctcatgttcaga 467
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagcattaattttttatcagagcagcccaagctcatgttcaga 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_m22.g1 MSMg01no346_m22.g1 CHROMAT_FILE:
MSMg01no346_m22.g1 PHD_FILE: MSMg01no346_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:35 2005
(451 letters)
>mm_chr4_150876902_150877752
Length = 851
Score = 810 bits (419), Expect = 0.0
Identities = 446/461 (96%), Gaps = 10/461 (2%)
Strand = Plus / Minus
Query: 1 aaggccaacctgatctatatggagagtgagttccaggacatccaggactatgcagagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaggccaacctgatctatatggagagtgagttccaggacatccaggactatgcagagaaa 697
Query: 61 ccctgtgtcaggaaaccaaa----------ccaaaccaagccaaaacctagtttggtggt 110
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 696 ccctgtgtcaggaaaccaaaccaaaccaagccaaaccaagccaaaacctagtttggtggt 637
Query: 111 gttggttgcagccccactatgtgcaaacatctccagcatccatccacagaatgtccattc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gttggttgcagccccactatgtgcaaacatctccagcatccatccacagaatgtccattc 577
Query: 171 ttttcccaatgccagtcagccaccatccgatcttctgtccctgtgcctttggcattagtt 230
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 576 ttttcccaatgccagtcagccaccatcagatcttctgtccctgtgcctttggcattagtt 517
Query: 231 cctcctatagtatgccgccctcccttctcgcctctaaagagaacaatattctgtcacact 290
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 516 cctcctatagtatgccgccctcccttctcacctctaaagagaacaatattctgtcacact 457
Query: 291 ccatctcttgtttatcggctcacctcgatgaacatctggcttgttttcctctcccgaccg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccatctcttgtttatcggctcacctcgatgaacatctggcttgttttcctctcccgaccg 397
Query: 351 tgaggacagtctgctacagacgctggtacaccttccccatctcatttctttcttaggcgc 410
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 396 tgaggacagtctgctacagactctggtacaccttccccatctcatttctctcttaggtgc 337
Query: 411 atgctcccaggcagaacagcctggccaacggcaagttcacg 451
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atgctcccaggcagaacagcctggccaacggcaagttcacg 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
