BAC Information

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BAC

Clone NameMSMg01-347C23
Chromosome4 (Build37)
Map Location 55,713,099 - 55,890,923
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347C23.T7 (MSMg01no347_c23.b1)MSMg01-347C23.TJ (MSMg01no347_c23.g1)
ACCAG459588AG459589
length777750
length of high quality
(start - end)		247 (77 - 323)529 (78 - 606)
definitionCHROMAT_FILE: MSMg01no347_c23.b1 PHD_FILE: MSMg01no347_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:05 2005CHROMAT_FILE: MSMg01no347_c23.g1 PHD_FILE: MSMg01no347_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,713,099 - 55,713,345)(55,890,513 - 55,890,923)
sequence
NCCATAGTCCTAATGTCACNNNNNGANNCNCTANTTCAAGAGGAGGCGCG
GAATTCTTCNNATTTCCAAAAAAACAAGAAGAGAGTGAGAGAGAAAGGAA
AGGGCAGAGAAGGGGGAAGCAGGCTTTGATTATTTTCATTAAAAAAAAAA
AAAGATTGCTTGCTAGTCTCACTGCAGAACTGCTGAGAAGATACCTAGAA
GAAGCTTTTATTTCATATGTAATTTCATGCAGGCCAGTCCTAGTTACTTT
TCTGTTGCAGTGGTCAATACCCTGAGTAGAGAAGCTCGAGCTGGAAAGGT
TTATTTTGGTCTAGAGCTTGAGGTTTTTTTCCATCATGGCTGCAAAATCA
CTGTGATAGGAGTTTGAGTCAGCTGGTCACAGTGCATCTGAGGTTAGGAG
TCAGAACAAAGGGTGCCTATGCTGAGTTCTCTTTGTCTTTTTTATTCAGT
CCAGGATCCCAGCCCAGGAAACAGAACTTCCCACACCAAGAGGGAGGCCT
GATTAACCTAATTAACCTAATAAAAATATCCCCTTCCATCATGTCTATAA
ACCAATCTAACCTAAATGGTCTCTGGCCAAAAGAATTTGGATCTCACCTT
GACAATTGAGAATAATCATTTGCCCTGTTGGTGTGTCTGTGCGTTTCACC
CTTATCCTATAATTCTTTTTTCTCCTCTCCCACTCTTTCCATTACCCTTT
TCCTTCCAGGCTACCCGCTTCTCTTCCCTCCTTTATTTTCCACCCTTTCT
TACTAGCAACCTGTTTTTTCTTCTTAN

NTTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGGATTCTGTTTTGATCCT
GAGTGGTACAGAGCCGGCGAGGACGTCAGATGATACACTTAGACCCTGTG
TTTGACTTCAGAGTACAGGATTAGGGTGGGGAGCCTCCAGACAGAGCAGA
GAGGGCTTCTATGTAATCCCTGACCCAATTACTTCACTCTTAGGATTGTC
AGACTGAATACATGAAAACACTGGAGTTTGAACCTCAGTGTCTTAGTTAG
GGTTTTACTGCTGTGAACAGATGCCCTAACCAAGGCAACTCTCATAAGGA
CATTTAATTGTTGCTGGCTTACAGCAATTGGTTCAGCAGTTCAGTTCATT
ATCATCAAGGTAGGAGCATGGCAGTGTCCAGGCAGGCATGGTACAGGAGG
TGCTGAGAGTTCGATATCTTCATCTGCAGGCTGCTAGGAGAAGACTGGCT
TTCAGGTAGCTAGTATGAGCATCTTANAGTCCTTGCCCACAGTGACACAC
CTCTTCTACAAGGCTATACTGCCTAATGGTGTCACACTCTGGGCCAATCA
TATACAAACCATCACACTCAGTTTAAAGGGAAGTGCTTTTTTCAGGGTAG
CACATGGACTCAATCTTTGTTTCTCTGATTTTGAATTTTTCTTTTTGGCT
CCGGGTTTGTCTGACGGCAACATTTACTCTTCTCCCAACTTTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_c23.b1 MSMg01no347_c23.b1 CHROMAT_FILE:
MSMg01no347_c23.b1 PHD_FILE: MSMg01no347_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:05 2005
         (247 letters)



>mm_chr4_55712899_55713545
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagagagtgagagagaaaggaaagggcagagaagggggaagcaggctttgattatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagagagtgagagagaaaggaaagggcagagaagggggaagcaggctttgattatttt 260

                                                                       
Query: 61  cattaaaaaaaaaaaaagattgcttgctagtctcactgcagaactgctgagaagatacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattaaaaaaaaaaaaagattgcttgctagtctcactgcagaactgctgagaagatacct 320

                                                                       
Query: 121 agaagaagcttttatttcatatgtaatttcatgcaggccagtcctagttacttttctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagaagcttttatttcatatgtaatttcatgcaggccagtcctagttacttttctgtt 380

                                                                       
Query: 181 gcagtggtcaataccctgagtagagaagctcgagctggaaaggtttattttggtctagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtggtcaataccctgagtagagaagctcgagctggaaaggtttattttggtctagag 440

                  
Query: 241 cttgagg 247
           |||||||
Sbjct: 441 cttgagg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no347_c23.g1 MSMg01no347_c23.g1 CHROMAT_FILE:
MSMg01no347_c23.g1 PHD_FILE: MSMg01no347_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:05 2005
         (529 letters)



>mm_chr4_55890513_55891441
          Length = 929

 Score =  772 bits (399), Expect = 0.0
 Identities = 408/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaggattctgttttgatcctgagtggtacagagccggcgaggacgtcagatgataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cttcaggattctgttttgatcctgagtggtacagagccggcgaggacgtcagatgataca 352

                                                                       
Query: 61  cttagaccctgtgtttgacttcagagtacaggattagggtggggagcctccagacagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cttagaccctgtgtttgacttcagagtacaggattagggtggggagcctccagacagagc 292

                                                                       
Query: 121 agagagggcttctatgtaatccctgacccaattacttcactcttaggattgtcagactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agagagggcttctatgtaatccctgacccaattacttcactcttaggattgtcagactga 232

                                                                       
Query: 181 atacatgaaaacactggagtttgaacctcagtgtcttagttagggttttactgctgtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 atacatgaaaacactggagtttgaacctcagtgtcttagttagggttttactgctgtgaa 172

                                                                       
Query: 241 cagatgccctaaccaaggcaactctcataaggacatttaattgttgctggcttacagcaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cagatgccgtaaccaaggcaactctcataaggacatttaattgttgctggcttacagcaa 112

                                                                       
Query: 301 ttggttcagcagttcagttcattatcatcaaggtaggagcatggcagtgtccaggcaggc 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 111 ttggttcagcagttcagttcattatcatcaaagtaggagcatggcagtgtccaggcaggc 52

                                                              
Query: 361 atggtacaggaggtgctgagagttcgatatcttcatctgcaggctgctagg 411
           ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 51  atggtacaggaggtgctgagagttcgatatctttatctgcaggctgctagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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