Query= MSMg01no347_e19.b1 MSMg01no347_e19.b1 CHROMAT_FILE:
MSMg01no347_e19.b1 PHD_FILE: MSMg01no347_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:14 2005
(441 letters)
>mm_chr4_45465435_45466275
Length = 841
Score = 779 bits (403), Expect = 0.0
Identities = 430/441 (97%), Gaps = 6/441 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagactattt---caggaagggaggaggtctggccactggccacacgaaagtaa 60
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagac-at--aggcaggaagggaggaggtctggccactggccacacgaaagtaa 260
Query: 61 cctcccactgaggactcctttggcctcatgtggccaggagaaagatgtccaacacacaag 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cctcccactgaggactcctttggcctcatgtggccaggagacagatgtccaacacacaag 320
Query: 121 aggacagatgtgagcaccaagtacctgctgccacatggccactggcagagcctagcctgg 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aggacagatgtgagcaccaagtacctgctgccacacggccactggcagagcctagcctgg 380
Query: 181 aagagagcgtgggtgggacttgtgtggccaggcctgactcagtaactacaaacttcccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagagcgtgggtgggacttgtgtggccaggcctgactcagtaactacaaacttcccag 440
Query: 241 cactcactgggcaccaggcttgaagctgggtaaggccccatctgtgcacagggcaggcag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cactcactgggcaccaggcttgaagctgggtaaggccccatctgtgcacagggcaggcgg 500
Query: 301 agctttgacctcatgcggcttacagtctccatccccatggagatctctgacctgccgagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctttgacctcatgcggcttacagtctccatccccatggagatctctgacctgccgagc 560
Query: 361 cgaagggcaaagccactcactgaattccacacaggaaaagaagacgtttgcagaggcccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 cgaagggcaaagccactcactgaattccacacaggaaaagaagacgtttgcagagaccct 620
Query: 421 tctaacagcacgtaatggagc 441
|||||||||||||||||||||
Sbjct: 621 tctaacagcacgtaatggagc 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_e19.g1 MSMg01no347_e19.g1 CHROMAT_FILE:
MSMg01no347_e19.g1 PHD_FILE: MSMg01no347_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:14 2005
(215 letters)
>mm_chr4_45640398_45641012
Length = 615
Score = 393 bits (203), Expect = e-114
Identities = 212/215 (98%)
Strand = Plus / Minus
Query: 1 tatgtaatggttccatgacacatgtaccgaggatgatctgatcccctcagataccctgga 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tatgtaatggctccatgacacatgtaccgaggatgatctgatcccctcagataccctgga 356
Query: 61 gggagagatgccaaatttccctacctgtaaagcccagttacattaacactggagaataca 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 355 gggagagatgccaaatttccctacctgtaaagcccagtcacattaacactggagaataca 296
Query: 121 cgcatgcgcacatgtgctgcaggggctgagctagcttataagtttggtcaggacagactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cgcatgcgcacatgtgctgcaggggctgagctagcttataagtttggtcaggacagactt 236
Query: 181 cgtctagaaataagaactataaatgcctgtaggtg 215
||||||||||||||||||| |||||||||||||||
Sbjct: 235 cgtctagaaataagaactacaaatgcctgtaggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space: 124836
Effective search space used: 124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
