Query= MSMg01no348_f03.b1 MSMg01no348_f03.b1 CHROMAT_FILE:
MSMg01no348_f03.b1 PHD_FILE: MSMg01no348_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:34 2005
(485 letters)
>mm_chr4_149924686_149925570
Length = 885
Score = 574 bits (297), Expect = e-168
Identities = 303/305 (99%)
Strand = Plus / Minus
Query: 181 ggtcttctcttctgacacagaggtgtatgtgcagacagagcactcctacataaaaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 ggtcttctcttctgacacagaggtgtatgtgcagacagagcactcctacataaaaataaa 826
Query: 241 tacataaaaggaagtagtggatgtgggcagatggattcatgcctacaatcccagcacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tacataaaaggaagtagtggatgtgggcagatggattcatgcctacaatcccagcacatg 766
Query: 301 ggaggtgaaggtcagaagttcaacatcatggcctgttacagaagctggcctgggcttgtg 360
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 765 ggaggtgagggtcagaagttcaacattatggcctgttacagaagctggcctgggcttgtg 706
Query: 361 caacccagcctttaaaataatatatttttcatttcctaacataatctttaataagattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 caacccagcctttaaaataatatatttttcatttcctaacataatctttaataagattat 646
Query: 421 atttcttattaaagaaatctttcgtctaccttctgatatctgtctctaccacaacagcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 atttcttattaaagaaatctttcgtctaccttctgatatctgtctctaccacaacagcca 586
Query: 481 ctttg 485
|||||
Sbjct: 585 ctttg 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_f03.g1 MSMg01no348_f03.g1 CHROMAT_FILE:
MSMg01no348_f03.g1 PHD_FILE: MSMg01no348_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:34 2005
(368 letters)
>mm_chr4_149771096_149771862
Length = 767
Score = 675 bits (349), Expect = 0.0
Identities = 364/369 (98%), Gaps = 3/369 (0%)
Strand = Plus / Plus
Query: 1 tttcctgcgttcagaccagggacttggcttataggcatttggcttctctttcccttggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctgcgttcagaccagggacttggcttataggcatttggcttctctttcccttggct 260
Query: 61 tctcattttctcttgagttgggcatcagcaaaagcccttccttgctccagaagcagactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcattttctcttgagttgggcatcagcaaaagcccttccttgctccagaagcagactg 320
Query: 121 ggtctccagaggagcgcctgctcctaatgaccttcaggttcttggggtgtttgctcttat 180
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ggtctccagaggagcgc-tgctcctaatgaccttcaggttcttggggcgtttgctcttat 379
Query: 181 -cttcctgattcggcctgagacagctgtataattactgttgcaggcagttcagtttattt 239
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tct-cctgattcggcctgagacagctgtataattactgttgcaggcagttcagtttattt 438
Query: 240 tagagaacaaagaacatggcacattagagtgtttgtaatgctgttgcccctcccccacag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tagagaacaaagaacatggcacattagagtgtttgtaatgctgttgcccctcccccacag 498
Query: 300 ctagcggaacaaggaagtaatggtgttaggtctatggattccatattagccaggcataat 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 ctagcggaacaaggaagtaatggtgttaggtctatggattccatattagtcaggcataat 558
Query: 360 tttgagtaa 368
|||||||||
Sbjct: 559 tttgagtaa 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space: 272122
Effective search space used: 272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
