Query= MSMg01no348_j05.b1 MSMg01no348_j05.b1 CHROMAT_FILE:
MSMg01no348_j05.b1 PHD_FILE: MSMg01no348_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:55 2005
(595 letters)
>mm_chr4_30712585_30713578
Length = 994
Score = 982 bits (508), Expect = 0.0
Identities = 572/594 (96%), Gaps = 7/594 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaattattacaaataacaaaataaatagtaatatgtaaaat-tttgctattact 62
||||||||||||| |||||||||||||||||||||||||||||| || | || |||||||
Sbjct: 793 ggaattcaattataacaaataacaaaataaatagtaatatgtaatatgtgtgttattact 734
Query: 63 aaattggtcaagatgagtttggcttagttgtgacaattctacaaatttcaggggcataag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaattggtcaagatgagtttggcttagttgtgacaattctacaaatttcaggggcataag 674
Query: 123 aaataaagctgctgcgtttgatcattaaagccctctgtgca-tcctgggtagccacattc 181
||||| ||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 673 aaatagagctgctacgtttgatcattaaagccctctgtg-agtcctgggtaaccacattc 615
Query: 182 aactgttactggggaatcctttaatcacgttctccctatatctcaacttagggctctttc 241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 614 aactgttactggggaatcctttaatcacgttctccctatatctcaatttagggctctttc 555
Query: 242 catagtcaacaacgagactgaataaatagccaaagtttcaatacttacccctaaatactt 301
||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 554 catagtccacaatgagactgaataaatagccaaagtttcaatacttactcctaaatactt 495
Query: 302 tagatccaagtgttatcatttgctgatacaataactaaagaccatcaacggctgagcttg 361
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 494 tagatccaagtgttatcatttgctgatacaataactaaagatcatcaacggccgagcttg 435
Query: 362 agaggcacagagagagtgcaagcatgcacatgctcatgcaggtgacaagtggtgaagaac 421
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agatgcacagagag--tgcaagcatgcacatgctcatgcaggtgacaagtggtgaagaac 377
Query: 422 tgaacacataaactgaagcacatctgacacattaggacaggaagaacttgctctgaagtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgaacacataaactgaagcacatctgacacattaggacaggaagaacttgctctgaagtg 317
Query: 482 ttagc-tttcaaaccgcttctgctttttcagctctgtactgtttccagggttgttctgga 540
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttagccttt-aaaccgcttctgctttttcagctctgtactgtttccagggttgttctgga 258
Query: 541 gagcatttatttttcgtgaatcatactgtttatcgctaaattatgacttttttg 594
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagcatttattttttgtgaatcatactgtttatcgctaaattatgacttttttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_j05.g1 MSMg01no348_j05.g1 CHROMAT_FILE:
MSMg01no348_j05.g1 PHD_FILE: MSMg01no348_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:55 2005
(512 letters)
>mm_chr4_30625688_30626599
Length = 912
Score = 959 bits (496), Expect = 0.0
Identities = 508/512 (99%)
Strand = Plus / Plus
Query: 1 attgctgagcatttttggattttgagctaatcattatgttcagctcgcagttgacatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgctgagcatttttggattttgagctaatcattatgttcagctcgcagttgacatttg 260
Query: 61 ggaaaggatctcaaccttttggagcatcctattctgtaaacataactccaaggcaggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaggatctcaaccttttggagcatcctattctgtaaacataactccaaggcaggcag 320
Query: 121 gagtgaagagattagagatggtatcagcttattccatgggaagaaaaccaataaagctac 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gagtgaagagattagagatggtatcaacttattccatgggaagaaaaccaataaagctac 380
Query: 181 ctatgagcagaggccacctttctccatttaatattaatgcattatgcaaaatacagttaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ctatgagcagaggccacctttctccatttaatattaatgcattatgcaaactacagttaa 440
Query: 241 aatctttattttattccagggataaatatcccaggaggatatttcaacatgaatctatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctttattttattccagggataaatatcccaggaggatatttcaacatgaatctatat 500
Query: 301 aatggttcttaaaatcacagcaccataaccttttaggtactgatgatactactgtattta 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggttcttaaaaacacagcaccataaccttttaggtactgatgatactactgtattta 560
Query: 361 atgtcctattggcatcaacccctacttgataatctactgacagatggaatgggtatcctg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtcctattggcatcaacccctacttgataatctactgacagatggaatgggtatccta 620
Query: 421 gcattttgtctattcccttgcctatttgtgcatcatttgacaggatacttctaagacagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcattttgtctattcccttgcctatttgtgcatcatttgacaggatacttctaagacagc 680
Query: 481 aaaatttagccagaatgttttggttcattgtc 512
||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatttagccagaatgttttggttcattgtc 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
