XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTATCTCCGCCATTCAAACCTCAACAACTATCTGCAGATGGCTTCAGA
TCCTGGCACATTGCTAGAGTGGGCTTTGTTCCTTTTTCCCAAAGTCAAGG
TGAAAAACAGGTGAGACTATAATATGATAGGTCTGTGCACAGTTGATAAC
CTTGCACAGCTGGAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGG
GCTATCTGATTTCCTTGAAACTCAATATTCATCATTCTGTAAATGGGGAC
AACCATAGCCTTCTTGGAGAATTGTGTTGAGGATTACAGGCATTTGCTGG
CTGCTCTAATAACCTATTTCTAAAACATGGTCTTAATTTTTAGGGGCCAG
TGAGGAGGAGGGGAAAGCTGAGCTTTTCACTGATAACATCTTCAAATGTA
CTGGCTACATTTTTACATAGCTATAGGCACTTTATGTCTACCTAATGGAA
GGACTCTAGATATGTTTGTTGCTGGTCTTAAAATTGGTTACATATTCCAC
TCTCCTGATTTTTTTTTTTCTTGAGAAAAGACTTCTGATGAGACTGTCCC
TACCGAGAAATCTATGCTTCATAACACAATTAATTTACACATAAATCTGT
GGTTGGGCGCAAGTAAGTCTCAATGTGAATCTTTAATAAACCCCAACCGA
TTCGCTCTTTTTCCCTCCTTTTTTTTTTAC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAA
TGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGAT
TTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTC
AGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTT
TATTGAGGATTTTTGTTTCGATATTCATAAGAGAAATTGGTCTGAAGTTC
TCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGCAATAGTGGC
TTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATA
GCTTGTGCAGAATTGGAATTACATCTTCTTTGAAGGTCTGGTATAACTCT
GCACTATACCTATCCGTCCCTGCGTTTTTCTTCGCTGTTACACTATTATT
ACCCGCCCCTTTTTCCTTACCTGAATTTGTCACTGCTCTCCATCCCTTTT
TTTTTTTTTTTTTTCCTCCTGTCATCCTGCTATTTTCTCCCTAAAATTGC
CCCTTTTCCCCCATTCTCTTCCCCCTTTTTTTTTTTCTTTAACCCCTTCT
CCCCCCTTGTTTCTTTGTCTCCCTTCCACTCTCTCCCTCCTTTTTT

Query= MSMg01no348_j07.b1 MSMg01no348_j07.b1 CHROMAT_FILE:
MSMg01no348_j07.b1 PHD_FILE: MSMg01no348_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:55 2005
         (530 letters)



>mm_chr4_86703758_86704687
          Length = 930

 Score =  920 bits (476), Expect = 0.0
 Identities = 513/526 (97%), Gaps = 4/526 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttatctccgccattcaaacctcaacaactatctgcagatggcttcagatcct 64
           ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaactgtgccattcaaacctcaacaactatctgcagatggcttcagatcct 264

                                                                       
Query: 65  ggcacattgctagagtgggctttgttcctttttcccaaagtcaaggtgaaaaacaggtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcacattgctagagtgggctttgttcctttttcccaaagtcaaggtgaaaaacaggtga 324

                                                                       
Query: 125 gactataatatgataggtctgtgcacagttgataaccttgcacagctggagctgtgtgtg 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 gactataatatgataggtctgtgcacagttgataaccttgcacagctgtagctgtgtgtg 384

                                                                       
Query: 185 tgtgtgtgtgtgtgtgtgtgtctggggctatctgatttccttgaaactcaatattcatca 244
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgtgtgtgtgtgtgtgt--ctggggctatctgatttccttgaaactcaatattcatca 442

                                                                       
Query: 245 ttctgtaaatggggacaaccatagccttcttggagaattgtgttgaggattacaggcatt 304
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 ttctgtaaatgggaacaaccatagccatcttggagaattgtgttgaggattacaggcatt 502

                                                                       
Query: 305 tgctggctgctctaataacctatttctaaaacatggtcttaatttttaggggccagtgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 503 tgctggctgctctaataacctatttctaaaacatggtcttaatttttaggggccagtgat 562

                                                                       
Query: 365 gaggaggggaaagctgagcttttcactgataacatcttcaaatgtactggctacattttt 424
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 563 gaggaggggaaagctgagcttttcactgataacatcttcaaacgttctggctacattttt 622

                                                                       
Query: 425 acatagctataggcactttatgtctacctaatggaaggactctagatatgtttgttgctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acatagctataggcactttatgtctacctaatggaaggactctagatatgtttgttgctg 682

                                                         
Query: 485 gtcttaaaattggttacatattcca-ctctcctgattttttttttt 529
           ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 683 gtcttaaaattggttacatattc-agctctcctgattttttttttt 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)