BAC Information

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BAC

Clone NameMSMg01-348K01
Chromosome4 (Build37)
Map Location 93,878,229 - 93,878,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348K01.T7 (MSMg01no348_k01.b1)MSMg01-348K01.TJ (MSMg01no348_k01.g1)
ACCAG460678AG460679
length720848
length of high quality
(start - end)
495 (41 - 535)160 (71 - 230)
definitionCHROMAT_FILE: MSMg01no348_k01.b1 PHD_FILE: MSMg01no348_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:59 2005CHROMAT_FILE: MSMg01no348_k01.g1 PHD_FILE: MSMg01no348_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGAAATTACAGGGGCTCTCTGTATCATCTTTTTCTTTCCAGTGGCTACT
GTACAGCTAGCAGCATGAAAGATTCAGGTCTTTGCATCCAGTGCTAGTAA
CACACATATACACACACACACCACCACCATCCTCAAAGAGCTAGGGGAAA
TAATACAATCACACAACTTCTGCATCAGGCACAAATGGAAAGTGGCATGA
ACACACAAGAAGAAGGTACAGGCAGATGTGGGGCTTATGAATATAGGTGT
AAATGATTACCTTCTAGTAAACATATATTCAAAAGTCATCTCTTTAATTT
GTGCAGAAAGTTAGTATGAGTTGAAAGATAGGGGGATAGCAGCAAATTCT
GAATGAGTATGAGAATTAGAATTAAGAGCTGAGTGTATGGCTCTATGCAG
TTCTCAGATTGATTCCAAGGAATTTCCACTGCGGTAAGATCTATTTCAGC
AGAAACACAGGTTAAATAATTGTGAAAAGGGATTAGTATGCTCTAGAGGA
GGAATAAGGACCCCGAGTTTCACCAATACCAACCACAAAAGTTATGACTC
GCACATCTATACTTTTTTGCAGGAATACACCCCTGCTTGTAACCATTAAG
GGTATAGAGGCGTGTGTCTCCCTTGGCCTTCAGTGCTTCTTTCCCACCCC
TATCACTAAAGAACGGAGAC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATGATCCATTGATCCCTGTGATTTTCTGT
GGTTCTCTCTTCTTTGGTGAGGGGGTAGTAGCCATACTTATCTGTGGGAA
TAACGACAAGATTTAGTAGGTAGTAAGGTAGTGTGTTGATAAATCAATGT
GGGGGTTTTCTATGGTCTGAGATGTCTNCTGGGTNNNTCCAAGGAAAGCT
TGGNGCTATGTTTTCCCAGTACTAGGTACAGAGAGACAGAGGCTTATTCT
TTGTGGCCCCTTTTTTTCCTTTTTTTTTCTCTTTTCTTTGCTGCCTTTGT
CTTCTTCTTTTTCCTTTTTTTTTTTTTTTATCTTTCTCTTTTCTCTTTTT
TTTTTTCTTTTGTTTTTTTCTTCTACTCTTTCTTTTGTCATTCTTTGTCT
CGTCGTAGATCTCTGCTCTTTCTCCTTTATTTTTCATTCTCCTTTTTCTT
TTTTTTTTTCTTTTATTCTATCATTCTTATTATTTCCACTTTCTTATTTC
ACTTCTGTTTTCTAGTATGTTTATCTTACGCCCCCTCATTTTTTCATTCT
TTTTCTCCTCCACCCCTCCTTCTCTTTCTATTTTTTCTTCCTTCTTCTTC
TTTATACCTCTATGTTTTACTTCTTATTTCTCTCTTTTACTCTTTCTATT
ATCTTAATATTTAACTTATTTTGCCATCCATTTATCACCCATATCTTCTC
TATCTTCCCTCCCATTCTTTCCTTTTTCTTTTTTGCCATTCCCCACCCTC
CTCTCTCTTTCCCCCCCCCTTCCCCTTTTTTTTTTCCTCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_k01.b1 MSMg01no348_k01.b1 CHROMAT_FILE:
MSMg01no348_k01.b1 PHD_FILE: MSMg01no348_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:59 2005
         (495 letters)



>mm_chr4_93878025_93878927
          Length = 903

 Score =  837 bits (433), Expect = 0.0
 Identities = 479/499 (95%), Gaps = 8/499 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgaaattacaggggctctctgtatcatctttttctttccagtggctactgtac 64
           ||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattcctgaaaagaaaggggctccctgtatcatctttttctttccagtggctactgtac 644

                                                                       
Query: 65  agctagcagcatgaaagattcaggtctttgcatccagtgctagtaacacacatatacaca 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 643 agctagcagcatgaaagattcaggtctttgcatccagtgctagtaacacacacacacaca 584

                                                                       
Query: 125 caca--------caccaccaccatcctcaaagagctaggggaaataatacaatcacacaa 176
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cacacacaccaccaccaccaccatcctcaaagagctaggggaaataatacaatcacacaa 524

                                                                       
Query: 177 cttctgcatcaggcacaaatggaaagtggcatgaacacacaagaagaaggtacaggcaga 236
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cttctgcttcaggcacaaatggaaagtggcatgaacacacaagaagaaggtacaggcaga 464

                                                                       
Query: 237 tgtggggcttatgaatataggtgtaaatgattaccttctagtaaacatatattcaaaagt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgtggggcttatgaatataggtgtaaatgattaccttctagtaaacatatattcaaaagt 404

                                                                       
Query: 297 catctctttaatttgtgcagaaagttagtatgagttgaaagatagggggatagcagcaaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 catctctttaatttgtgcagaaagttagtatgagttgaaagatagggggatagcagcaaa 344

                                                                       
Query: 357 ttctgaatgagtatgagaattagaattaagagctgagtgtatggctctatgcagttctca 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 343 ttctgaatgagtatgagaattagaattaagagctgagtgtatggctctatgcagttctta 284

                                                                       
Query: 417 gattgattccaaggaatttccactgcggtaagatctatttcagcagaaacacaggttaaa 476
           |||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 283 gattgattccaaggcacttccactgtggtaagatctatttcagtagaaacacaggttaaa 224

                              
Query: 477 taattgtgaaaagggatta 495
           |||||||||||||||||||
Sbjct: 223 taattgtgaaaagggatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 903
Length adjustment: 10
Effective length of query: 485
Effective length of database: 893
Effective search space:   433105
Effective search space used:   433105
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)