CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATATCTCCCATGAGTCAGTTGCTTTTAAGAATCCCATCACTTGCTGA
CCAAGCTTTTAACACATGCACATTTAGAGGACATTTGGGATTCAAGGCTC
AACAATTGGTAACAGTTTGAAATAAAATAAAATGTTGTATTTAACGCTGA
CACCATTGCATACACTAGCAAGATTTTGCTGATAGGACCCTGATATAGCT
GTCTCTAATGAGACTACACCGTGGCCTAGCAAACACATAAGTGGATGCTC
ACAGTCAGTTAATGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGA
AAATACCCAAGGAACTAAAGGGAACTGCAACCCTATAGGTGTAACAACAT
TATGAACTAACCAGTACCCCGGAGCTCTTGTATCTAGCTGCATATGTATC
AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTG
CAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGGA
ATGGGTGGGTAGGGGAGTGGGNGGGGAGGNNNTNNNNNNNNNNNNNTTNN
TTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTN
TTTTTTTTNTNTTTTTTTTTTTTTTT

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAACACATCAAAAAAGTCATCC
AGAGAACCGGACAGCTTCTGGGACGGGCAGAAGCACAAAGCCGCTGAGGC
AGCAGCCTGAGCCGGCCGCAGACAACCGGCCACCATCCGGACCAGAGGAC
AGGTGTCCGCCTGGCTTGGGAGGCGACCTCAGCCTCAGCAGCAGCGGTCG
CCATCTTGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACAGG
TTAGAGGGTGCGCCAGAGAACCGGTCAGCTTCTGGGACGGGCAGAAGCAC
AGAGCCGCTGAGGCAGCAGCCTGGGCGGGCCGCAGATAACCGGCCACCAT
CCGGACCAGAGGACAGGTGTCCGCCTGGCTCGGGAGACGGCCTCGGCCTC
AGGAGCAGCGGTCACCATCTTGGTTCCAGGACTCCCTGGAACTTAGGATT
TTAGTCTGCACAGGTGAGAGTCTGCACCACAGAAGCTGACAGCTTCTGGG
AACTGCCAAAGCAACACAGCTTCTGAGAGAGGCCCTGTTTTGGGGCTTCT
TCCTCGACCAGGAGGAGGTCCAAAAACAAGATATCTGCGCACCTTCCCTG
TAAGAGAGATTGTCAGCAAAGAGTGCTCTGAGCACTTGAACCTCACAGGA
GAGATACTGTCCCCTAGGTCTGCTGTATAGCACGTTCTCAATTCCTCTGC
ATAAAAATTCCTTCG

Query= MSMg01no349_a09.b1 MSMg01no349_a09.b1 CHROMAT_FILE:
MSMg01no349_a09.b1 PHD_FILE: MSMg01no349_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:31 2005
         (526 letters)



>mm_chr4_15302040_15302965
          Length = 926

 Score =  895 bits (463), Expect = 0.0
 Identities = 508/523 (97%), Gaps = 3/523 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatctcccatgagtcagttgcttttaagaatcccatcacttgctgaccaagct 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| 
Sbjct: 205 gaattcatatctcccatgagtcagttgcttttaagaatcccattacttgctgatcaagcc 264

                                                                       
Query: 65  tttaacacatgcacatttagaggacatttgggattcaaggctcaacaattggtaacagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaacacatgcacatttagaggacatttgggattcaaggctcaacaattggtaacagtt 324

                                                                       
Query: 125 tgaaataaaataaaatgttgtatttaacgctgacaccattgcatacactagcaagatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaaataaaataaaatgttgtatttaacgctgacaccattgcatacactagcaagatttt 384

                                                                       
Query: 185 gctgataggaccctgatatagctgtctctaatgagactacaccgtggcctagcaaacaca 244
           ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct: 385 gctgataggaccctgatatagctgtctctaacgagactacgccggggcctagcaaacaca 444

                                                                       
Query: 245 taagtggatgctcacagtcagttaatggatggatcacagggcccccaatggaggagctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taagtggatgctcacagtcagttaatggatggatcacagggcccccaatggaggagctag 504

                                                                       
Query: 305 agaaaatacccaaggaactaaagggaactgcaaccctataggtgtaacaacattatgaac 364
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 505 agaaaatacccaaggagctaaagggaactgcaaccctataggtggaacaacattatgaag 564

                                                                       
Query: 365 taaccagtaccccggagctcttgta-tctagctgcatatgtatcaaaagatggcctagtc 423
           |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 565 taaccagtaccctggagctcttg-actctagctgcatatgtatcaaaagatggcctagtc 623

                                                                       
Query: 424 ggccatcactggaaagagaggcccattggacttgcaaactttatatgccccagtacaggg 483
           |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct: 624 ggccatcactggaaagagag-cccattggacttgtaaaccttatatgccccagtacaggg 682

                                                      
Query: 484 gaatgccagggccaaaaagtgggaatgggtgggtaggggagtg 526
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaatgccagggccaaaaagtgggaatgggtgggtaggggagtg 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)