Query= MSMg01no349_f16.b1 MSMg01no349_f16.b1 CHROMAT_FILE:
MSMg01no349_f16.b1 PHD_FILE: MSMg01no349_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:56 2005
(527 letters)
>mm_chr4_47543320_47544246
Length = 927
Score = 996 bits (515), Expect = 0.0
Identities = 521/523 (99%)
Strand = Plus / Minus
Query: 5 gagattataaatgagtcaaaccttttctgatcaactccattaaatgctgtatttgtggtc 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagattataaatgagtcaagccttttctgatcaactccattaaatgctgtatttgtggtc 564
Query: 65 ttttgatcatcttaagtagcaacattctataaccaggcctcaatttaattagtaccttat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttgatcatcttaagtagcaacattctataaccaggcctcaatttaattagtaccttat 504
Query: 125 tcttgcacattgaatttttaaatttttactgaaattataagtaatgtcttggtgagaatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcttgcacattgaatttttaaatttttactgaaattataagtaatgtcttggtgagaatt 444
Query: 185 tctatggctaaggctcatttgtcatctgtgaaattgtctactttaaaattctaggagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctatggctaaggctcatttgtcatctgtgaaattgtctactttaaaattctaggagaaa 384
Query: 245 aagtattatgttaaatatgtgttttgtcactcacagttttgacaaatattaaagtaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagtattatgttaaatatgtgttttgtcactcacagttttgacaaatattaaagtaaaaa 324
Query: 305 aatcagtgtactaacctcaatatcatatattgacttcaattttgctaccattaatcacag 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 aatcagtgtactaacctcaatatcatatgttgacttcaattttgctaccattaatcacag 264
Query: 365 ctatatttgtgagttatttttgtactttattttctttctctatctcaatcttaatatata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctatatttgtgagttatttttgtactttattttctttctctatctcaatcttaatatata 204
Query: 425 tgcatatatgtgtacatatgtgtgtatatatacacatacatatgtgtatatataaatata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgcatatatgtgtacatatgtgtgtatatatacacatacatatgtgtatatataaatata 144
Query: 485 tgtatacacacatatgtgtgtatgtgtatatatagatatatgt 527
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tgtatacacacatatgtgtgtatgtgtatatatagatatatgt 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_f16.g1 MSMg01no349_f16.g1 CHROMAT_FILE:
MSMg01no349_f16.g1 PHD_FILE: MSMg01no349_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:56 2005
(210 letters)
>mm_chr4_47531311_47531920
Length = 610
Score = 373 bits (193), Expect = e-108
Identities = 193/193 (100%)
Strand = Plus / Plus
Query: 1 ttcctgcaggaacaaatccgggcccccatggcatctgtcccctcctgttcctccagctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctgcaggaacaaatccgggcccccatggcatctgtcccctcctgttcctccagctgg 260
Query: 61 cctccttgccatgtgcaccccctcccggaaccaggcctggcctcctgcccctgcccactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccttgccatgtgcaccccctcccggaaccaggcctggcctcctgcccctgcccactt 320
Query: 121 gtgcttgtgccttactggagcttagggtgcagggctggagctctggtgtgtgtgtgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcttgtgccttactggagcttagggtgcagggctggagctctggtgtgtgtgtgtgtg 380
Query: 181 tgtgtgtgtgtgt 193
|||||||||||||
Sbjct: 381 tgtgtgtgtgtgt 393
Score = 89.7 bits (46), Expect = 1e-22
Identities = 51/54 (94%), Gaps = 3/54 (5%)
Strand = Plus / Minus
Query: 160 gctctg---gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 210
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 73
Score = 87.7 bits (45), Expect = 5e-22
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 166 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 210
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 61
Score = 87.7 bits (45), Expect = 5e-22
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 166 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 210
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 63
Score = 87.7 bits (45), Expect = 5e-22
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 166 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 210
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 65
Score = 87.7 bits (45), Expect = 5e-22
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 166 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 210
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 67
Score = 87.7 bits (45), Expect = 5e-22
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 166 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 210
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 69
Score = 87.7 bits (45), Expect = 5e-22
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 166 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 210
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 13
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space: 120801
Effective search space used: 120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
