Query= MSMg01no349_g02.b1 MSMg01no349_g02.b1 CHROMAT_FILE:
MSMg01no349_g02.b1 PHD_FILE: MSMg01no349_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:58 2005
(421 letters)
>mm_chr4_117091257_117092077
Length = 821
Score = 698 bits (361), Expect = 0.0
Identities = 396/409 (96%), Gaps = 3/409 (0%)
Strand = Plus / Minus
Query: 13 gaattccacagctttccttgtcactgtgccgttagactgcactccgttctaccacatggg 72
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 503 gaattccacagcaggccttgtcactgtgccgttagactgcactctgttctaccacatggg 444
Query: 73 ccatcgctcccatatacctgtgcgacagtcctctattatcccgtttccagagtgataatg 132
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccattgctcccatatacctgtgcgacagtcctctattatcccgtttccagagtgataatg 384
Query: 133 tttttggccattgttattttattatatgaggcaatcttttttcaataaaagctatgactt 192
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 tttttggccattgttattttattatatgaggcaatcttttcccaataaaagctatgactt 324
Query: 193 gtgagttcatgattaggtctcctcttccttagtacctaataatcatgccttaataatcct 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgagttcatgattaggtctcctcttccttagtacctaataatcatgccttaataatcct 264
Query: 253 taagtttaacagttcctcccagggactcgaagactttatcatcatcatcatcatcagatt 312
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 263 taagtttaacagttcctcccagggactcgaagacttt---atcatcatcatcatcagctt 207
Query: 313 ccagagcgcttcttaaaacagagaggccccaccagagtttctgcttctataggtaggaag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccagagcgcttcttaaaacagagaggccccaccagagtttctgcttctataggtaggaag 147
Query: 373 cgtgactgtggctctacatctccaatgagtccccgaggcataccgatgt 421
|||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 146 cgtgactgtggctctacatctccaataagtccccgagggataccgatgt 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_g02.g1 MSMg01no349_g02.g1 CHROMAT_FILE:
MSMg01no349_g02.g1 PHD_FILE: MSMg01no349_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:58 2005
(390 letters)
>mm_chr4_116902080_116902869
Length = 790
Score = 746 bits (386), Expect = 0.0
Identities = 389/390 (99%)
Strand = Plus / Plus
Query: 1 atggccggcctcggccgtgggaagtggtgcaggccggcgtggaaggctgagctctgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggccggcctcggccgtgggaagtggtgcaggccggcgtggaaggctgagctctgcctc 260
Query: 61 ttaggtctgtgggaagcaccgctgggaaaggtaagactgcgcacgcacgcgcatgctcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggtctgtgggaagcaccgctgggaaaggtaagactgcgcacgcacgcgcatgctcat 320
Query: 121 gactcacaactccagcgcatagctgcagctcacctgggcagtcttgagagtctgcagggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactcacaactccagcgcatagctgcagctcacctgggcagtcttgagagtctgcagggc 380
Query: 181 cagtcgctgggctttcggggactcacagggcagcagagctatcaggcctttgtatacttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcgctgggctttcggggactcacagggcagcagagctatcaggcctttgtatacttg 440
Query: 241 gttctggtacttgggattgccatgaaccaacgtttccagcagaatctgcacttcctcctg 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gttctggtacttgggattgccatgaaccaacgtttccagcagaacctgcacttcctcctg 500
Query: 301 ggtctcttctgatttagactttgccagaaattctgctatggctctcacacctaggcaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtctcttctgatttagactttgccagaaattctgctatggctctcacacctaggcaaag 560
Query: 361 gagagaaagtgataaattggacaggcttta 390
||||||||||||||||||||||||||||||
Sbjct: 561 gagagaaagtgataaattggacaggcttta 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
