Query= MSMg01no349_i20.b1 MSMg01no349_i20.b1 CHROMAT_FILE:
MSMg01no349_i20.b1 PHD_FILE: MSMg01no349_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:11 2005
(584 letters)
>mm_chr4_152817464_152818447
Length = 984
Score = 959 bits (496), Expect = 0.0
Identities = 535/554 (96%), Gaps = 10/554 (1%)
Strand = Plus / Minus
Query: 5 gaattcagtgtcattatagcccggggcctttcctcctgttgggaccctctctttggggca 64
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 554 gaattcagtgtcaagatagcccggggtctttcctcctgttgggaccctctctttggggca 495
Query: 65 tgtatatggtgctgtctctgtcttcccagatctctctgcacaccaggctgttttttaacc 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 494 tgtatatggtgctgtctctatcttcccagatctctctgcacaccaggctgtttcttaacc 435
Query: 125 tcaccttagagagacacctcaacacagacctggggctggcctggtgggaagacaacgttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcaccttagagagacacctcaacacagacctggggctggcctggtgggaagacaacgttc 375
Query: 185 aatgcagtcatagtttggtataggagcagacatcacatctggtgacaggagaccacctcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aatgcagtcatagtttggtataggagcagacatcacatctggtgacaggagaccacctcc 315
Query: 245 tgtggtgattgtcacagagtggtgagctggaggaacagtagagcagaaaattctggaaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtggtgattgtcacagagtggtgagctggaggaacagtagagcagaaaattctggaaca 255
Query: 305 gatgtgggcccccaagaagggtctttcagggaagagattgcctagt----------gtca 354
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 254 gatgtgggcccccaagaagggtctttcagggaagagattgcctagtgtcacataacgtca 195
Query: 355 aaggctgaaggcctgttttggagcttaagtgtcagtatattttcttcagtctctctcctg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aaggctgaaggcctgttttggagcttaagtgtcagtatattttcttcagtctctctcctg 135
Query: 415 aggaatctgaccctgttcttagcttcacacctagaaaatgctcagtgccaacaaacacca 474
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aggaatctgaccctgttctcagcttcacacctagaaaatgctcagtgccaacaaacacca 75
Query: 475 cctgacctttctcttcttccttcaaaacagtatgaccagcgtgcttgggagagacctcca 534
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 cctgacctttctcttcctccttcaaaacagtatgaccagcgtgcttgggagagacctcca 15
Query: 535 tcgcctctcctgtc 548
|| |||| ||||||
Sbjct: 14 tcacctcccctgtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_i20.g1 MSMg01no349_i20.g1 CHROMAT_FILE:
MSMg01no349_i20.g1 PHD_FILE: MSMg01no349_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:12 2005
(491 letters)
>mm_chr4_152646323_152647210
Length = 888
Score = 861 bits (445), Expect = 0.0
Identities = 477/489 (97%), Gaps = 3/489 (0%)
Strand = Plus / Plus
Query: 1 taagtatttttaaaaataattttcagtcactaaaatgccaagtgatgtgaattaatttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtatttttaaaaataattttcagtcactaaaatgccaagtgatgtgaattaatttat 260
Query: 61 gggatagatatcgtccaatgaagtcggccataaactgagcatctgtatttaaagctgtgg 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gggatagatatcgtccaatgaagtcggccataaactgaccatctgtatttaaagctgtgg 320
Query: 121 tttgcaaacacctatgtaatgaaaccagaatcaggagggcggggtggggggagtgtccac 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tttgcaaacacctatgtaatgaaaccagaatcaggagggcggggcggggggagtgtccac 380
Query: 181 agcagacctggttgaggagtgtccccttgctgacctttctctactccacccatgtccttc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagacctggttgagaagtgtccccttgctgacctttctctactccacccatgtccttc 440
Query: 241 tccaggggagtctcggcttctttcacgtgtttctctgactgtccagccactcatccctga 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccattggagtctcggcttctttcacgtgtttctctgactgtccagccactcatccctga 500
Query: 301 gtgagggctgggctttaaagtgctccgctgttgttgtgcgagtatctgtggtaaggaaga 360
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 501 gtgagggctgggctttaaagtgctccgctgttgt---gcgagtatctgtgggaaggaaga 557
Query: 361 tgaaagccagggagatggctcaggggttaacgacgactgctacctagcctgatgactcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgaaagccagggagatggctcaggggttaacgacgactgctacctagcctgatgactcca 617
Query: 421 gtgtgatctgtaggatccacaagaggagggagagaaatatttgtcctttggcatccaggg 480
|||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 618 gtgtgatctgcaggatccacaagaggaggaagagaaatatttgtcctttggtatccaggg 677
Query: 481 gcatattaa 489
|||||||||
Sbjct: 678 gcatattaa 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 888
Length adjustment: 10
Effective length of query: 481
Effective length of database: 878
Effective search space: 422318
Effective search space used: 422318
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
