BAC Information

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BAC

Clone NameMSMg01-349J16
Chromosome4 (Build37)
Map Location 152,419,079 - 152,569,273
singlet/doubletdoublet
Overlap genenone
Upstream geneNol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349J16.T7 (MSMg01no349_j16.b1)MSMg01-349J16.TJ (MSMg01no349_j16.g1)
ACCAG461420AG461421
length779779
length of high quality
(start - end)		508 (33 - 540)489 (71 - 559)
definitionCHROMAT_FILE: MSMg01no349_j16.b1 PHD_FILE: MSMg01no349_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:16 2005CHROMAT_FILE: MSMg01no349_j16.g1 PHD_FILE: MSMg01no349_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,568,770 - 152,569,273)(152,419,079 - 152,419,567)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCTGTA
CCTGAGGAGGATCCCGGGCTTCTGATCCTTCTGTGTGCTGGGGTTGCAGA
CATGTCCCACCACCCAGTTTAAATGAGCCAGGGTTTCCTGGATGCCGTGC
AAACCTTCAACCAAAAGACCCACACACTCAGGTCCTGGAACCTCTTTGTT
CTTGGGAAAGATGTTGGGCCCATAATGGGAACCTCCCCCAGCGTTCCTCC
AGCTACACCGACAGGAACCACACAGGGGCCACTGCAGTCTATGAGTTGCT
TTGCAAACCCATACAGTTCCCCCATGGTGACTATAATGCGTACGGAAGAG
TTGACACTCTGTGTGGCTTCCTTGACTAGCAGGCAAGGAAGGGTGTCTGA
CTGCTTCCAGCTCACCCACAGGAAGAGGCTCTAGACATGCACTGTACCAG
AGCTGGAGCCCTGGTTTGACTTTGCCCAGGTTGCCAGATAAAGCATAAGT
AGCCCAAATAAGTTTAAATGTCAGATAAATATGAATGGTTTTGGTGTAGC
TATGCTCCCAACATGACATAGATGTCTCAGTTATGGGTTCTATTGCTGGG
ACNAAACATCATGACCAAGAACGCCAGTATGAAAAGAAAGGGGTGAATGA
CTTAACCTCCCGAACATAGACCATCATTGGAAGAAGCCGGAAAGGAACTG
TAAAAGGCTGGAAGGCCTGGTGGATAGTTGTTAAAGGCTGGCCCCCCCGG
TTGTTCACCCCGCCTCTTTTAAAACCATA

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGATACTACGGAACACGCTGGATTATTAG
AATGAAGGCCAAGAACAGGGTGGGGCCTGGAAGTCCCTCATGGACACTGA
GCCCTGCCTTGTACACCAGGCTCTGACATGAAGCAGAGGCTGGCTCAGGA
CCTGTGCCATTGGTCTATGATGTTCACAACCACAGTCACTAACACCCTTC
TTCCCTTCCCAATGGAAGCACAACCCTGCCTCCTGCCACCTGAGAGACTG
GGAGTTTATTGTGGAAAAAGACTGTCTTTGCTCCAACTCTGGTCTTGCAA
AACACCCAGCACACTCTACAGGCTCTTGGTCACTTTGATGGGCAAAGGGA
TCAATACCACATCCTTTAGAAAGGCCACTGACAAAGGATTCCCATAATGA
GGCTCAGAGCAGCCAGTGCTACTCTGTTAGGATGACGGGGGTTCTTGCTT
TCCATTAACCAGAGGCAGCTGCTCCTTGAATGCCAACATCTGAGAACAGG
GCGATCTGTAGATTAAAGATGTTTGCGCTAAAGGCACATCTGATCTGTGA
GGAGGTATCCGGAAGCTTTGCTGTACTGAGTGTCCCTGGGCACCGGGTAA
CTTATGCGTGCGTGTCTTGTCTCTGGTACCCCAGGTTTTTCTCTGCTGAT
TGGTATGCAGCAAAACCCCCCCGGGAAAAAANTCCACATTTTTGACCTCT
AACTTCTTATTACGCCTCCGTACAGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_j16.b1 MSMg01no349_j16.b1 CHROMAT_FILE:
MSMg01no349_j16.b1 PHD_FILE: MSMg01no349_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:16 2005
         (508 letters)



>mm_chr4_152568551_152569458
          Length = 908

 Score =  882 bits (456), Expect = 0.0
 Identities = 492/504 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctgtacctgaggaggatcccgggcttctgatccttctgtgtgctggggttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaattcactctgtacctgaggaggatcccgggcttctgatccttctgtgtgctggggttg 664

                                                                       
Query: 65  cagacatgtcccaccacccagtttaaatgagccagggtttcctggatgccgtgcaaacct 124
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tatacatgtcccaccacccagtttaaatgagccagggtttcctggatgccgtgcaaacct 604

                                                                       
Query: 125 tcaaccaaaagacccacacactcaggtcctggaacctctttgttcttgggaaagatgttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tcaaccaaaagacccacacactcaggtcctggaacctctttgttcttgggaaagatgttg 544

                                                                       
Query: 185 ggcccataatgggaacctcccccagcgttcctccagctacaccgacaggaaccacacagg 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 543 ggcccataatgggaacctcccccagcgttcctccaactacaccgacaggaaccacacagg 484

                                                                       
Query: 245 ggccactgcagtctatgagttgctttgcaaacccatacagttcccccatggtgactataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggccactgcagtctatgagttgctttgcaaacccatacagttcccccatggtgactataa 424

                                                                       
Query: 305 tgcgtacggaagagttgacactctgtgtggcttccttgactagcaggcaaggaagggtgt 364
           ||||||| ||||||||| ||||||||||||||| |||||| |||||||||| ||||||| 
Sbjct: 423 tgcgtacagaagagttggcactctgtgtggctttcttgacaagcaggcaagaaagggtgg 364

                                                                       
Query: 365 ctgactgcttccagctcacccacaggaagaggctctagacatgcactgtaccagagctgg 424
           ||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||
Sbjct: 363 ctgactgcttccagctcatgcacaggcagaggctctagacatgcactgtaccagagctgg 304

                                                                       
Query: 425 agccctggtttgactttgcccaggttgccagataaagcataagtagcccaaataagttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agccctggtttgactttgcccaggttgccagataaagcataagtagcccaaataagttta 244

                                   
Query: 485 aatgtcagataaatatgaatggtt 508
           ||||||||||||||||||||||||
Sbjct: 243 aatgtcagataaatatgaatggtt 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_j16.g1 MSMg01no349_j16.g1 CHROMAT_FILE:
MSMg01no349_j16.g1 PHD_FILE: MSMg01no349_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:16 2005
         (489 letters)



>mm_chr4_152418879_152419767
          Length = 889

 Score =  930 bits (481), Expect = 0.0
 Identities = 487/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatactacggaacacgctggattattagaatgaaggccaagaacagggtggggcctgg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatactacggaacacactggattattagaatgaaggccaagaacagggtggggcctgg 260

                                                                       
Query: 61  aagtccctcatggacactgagccctgccttgtacaccaggctctgacatgaagcagaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtccctcatggacactgagccctgccttgtacaccaggctctgacatgaagcagaggc 320

                                                                       
Query: 121 tggctcaggacctgtgccattggtctatgatgttcacaaccacagtcactaacacccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctcaggacctgtgccattggtctatgatgttcacaaccacagtcactaacacccttc 380

                                                                       
Query: 181 ttcccttcccaatggaagcacaaccctgcctcctgccacctgagagactgggagtttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccttcccaatggaagcacaaccctgcctcctgccacctgagagactgggagtttatt 440

                                                                       
Query: 241 gtggaaaaagactgtctttgctccaactctggtcttgcaaaacacccagcacactctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggaaaaagactgtctttgctccaactctggtcttgcaaaacacccagcacactctaca 500

                                                                       
Query: 301 ggctcttggtcactttgatgggcaaagggatcaataccacatcctttagaaaggccactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctcttggtcactttgatgggcaaagggatcaataccacatcctttagaaaggccactg 560

                                                                       
Query: 361 acaaaggattcccataatgaggctcagagcagccagtgctactctgttaggatgacgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 acaaaggattcccataatgaggctcagagcagccagtgctactctgttaagatgacgggg 620

                                                                       
Query: 421 gttcttgctttccattaaccagaggcagctgctccttgaatgccaacatctgagaacagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcttgctttccattaaccagaggcagctgctccttgaatgccaacatctgagaacagg 680

                    
Query: 481 gcgatctgt 489
           |||||||||
Sbjct: 681 gcgatctgt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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