BAC Information

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BAC

Clone NameMSMg01-349M12
Chromosome4 (Build37)
Map Location 64,905,981 - 64,906,526
singlet/doubletsinglet
Overlap genePappa
Upstream genenone
Downstream geneAstn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349M12.T7 (MSMg01no349_m12.b1)MSMg01-349M12.TJ (MSMg01no349_m12.g1)
ACCAG461554AG461555
length1,439752
length of high quality
(start - end)		---546 (77 - 622)
definitionCHROMAT_FILE: MSMg01no349_m12.b1 PHD_FILE: MSMg01no349_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:30 2005CHROMAT_FILE: MSMg01no349_m12.g1 PHD_FILE: MSMg01no349_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAAGGTAGCGGATGGAAAAACTAGCGGCTGGCCGCACAAACACACGAC
AATAGAAGAAGACACCGTATATAACCCCTCGACCGAACAGAATTTACCAC
ATAATCATTCCGTGTATCTATCCTGACAAGTAATCGCGACGGCCTGTTTC
GCGCACAGACGCGATCAGGACTAGCTGTGACCACGAGAGCCGCGACGGCC
GGCGTATAACACTCGCTCCATCTTTTCATAGCACCCCCGTCAACACAACA
CCAGCTGAGTTTATTATAATAGGCGTGCTATAGATGACTACATTACAACA
TATACGCAATAAGGTTCATCTTACAACATGGCATACATATACGTCACTCG
CACGTATTACTTGTATGNAGCATCTGAAGACACACGCGGGTTCTTATTCC
TATGGGTGCTACGCACCAGATGCGACAACCTATCTGCGCCACACGGTCGC
ATGACATTTTCGACACGAGTTCCAATTTAACGTTTGTACGATGAGCTCTT
CCATTATTCACTATCTGCACTTTATTAAGACAGTGTTGCACGAACTCTAT
TGTTTACACCATACTATCCTCCTTGCGTGCTGCGCAAGCGACGGATCTTT
GACGACCGTTTTCCGGGCATCTCACGTTCACGAAGCATAAAGTCACCCTG
CGCGAATCACACACACATTCTACTTACACCTTCCAGTACTCACGTGCGAC
GCGCGGCGCACAAGCAGCTTATATATCTATGTAGTGAACGCCTTCATACG
GAATACACAAGATTACGGCGTCATACATATACAAGTCGATATTACTCAAC
AGANCGCGATTACAACTTCCGCCCTCATACATTAATGCGCCCGCGCACAC
TAGTGACTACTAGGTATCGCGACCTACTCTCATATAGTGTGATACGATCC
AATGCTGCGCGGCGCTAAATCAAATACATCTCTGCTACTACGACACTTAT
ATCGCGCGGTATAGCTTTCTCTGTCAACGTGATATGCAGGAAGATTCTAT
GCACGTTTCGCGCAACGCGCAGTCATACTTAAATAGTGTGGACTATCGTC
GCGCTGGCGAGCGCAACACGCGACCGTCTTGCCTCAATTTTACACGACGA
CTGATTCGCGTACAACCACAATTGTGTAAGCTCACTCACGGACATATAAA
ATGTCATCATCGATTTCTCATCACCTAGATGATTACGCGGCAGAAGAAGC
GAACCAACAATAACCAGTATTATCGATCTATTGTGCTGACCGACCGAACG
CTCGGCGAATCTGGATACTCTCACGTATGTATCGTCGCCACCCACACCCG
AGTTAACGTTACAGCGTGATAGACTACCGATACCTCGCGACGACGAATAC
TCATTATATACGAATCGGCCACGAATTACGAAATCACNGAGACGGACACA
TCGCTAGTGACGCGCGCGCGCTGACTANATCAACTACAG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTCCTCCCAGAGTCCTTCTT
TTTAAAACTACACAGTTTTTTAAAACAAAAACAACCCAGGATTTTAATCC
TAGAAGTTAGACTCCAAAGGCCCTTGGGGTTCATCTAACTCATCCTCACC
ACTTGAGGCTGATGTGTGTGGGAAGGCCTCGTGACTTTGAAAAAGGTAGC
GACCAGAGCCATTTGGTGTCAGGATCCAATGGTGGGGCTCAGAACCAGCC
CTGCCACAGATGCACCGGCTGCTTCTGCATCAGTCAATTCTAGGATTCAG
GGGGAGGAAGAGGATGAGCCCAAGAGCTGCACTGAATTACCCTCAGTACG
CTAGAGAATTATGACCTTGCAAATGCTGTCTAGTTCCCAGAAGGGAAAAC
TGAGCCTGGGTGGCAGCAGAGAGGTACCCATGGCTACCCAGATAGCAGCT
TTAGGCTCCAAGCTCCCCAGTGCAACCAGGACACTGGGATCCACTTGAGT
GCTCTTTTCTCCTTATGTTAAATGTTAGAAAGCAATTTGGCTATTGTAAT
TGGGAAAAGAGAAGGCTTGAGAACCGAGGGTCCCATCACTGAGCCGTGTT
TTTGGTTTGTTTGCTTTTGTTTCTGTTTCTTCGTAGTCGTGAATATGGCA
TGGCATAGACACCAGCAAGGTGTGTGTGTGTGTGTGTGTGACGTGAGTCA
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_m12.g1 MSMg01no349_m12.g1 CHROMAT_FILE:
MSMg01no349_m12.g1 PHD_FILE: MSMg01no349_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:30 2005
         (546 letters)



>mm_chr4_64905781_64906726
          Length = 946

 Score = 1040 bits (538), Expect = 0.0
 Identities = 544/546 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttctcctcccagagtccttctttttaaaactacacagttttttaaaacaaaaacaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctttctcctcccagagtccttctttttaaaactacacagttttttaaaacaaaaacaacc 687

                                                                       
Query: 61  caggattttaatcctagaagttagactccaaaggcccttggggttcatctaactcatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caggattttaatcctagaagttagactccaaaggcccttggggttcatctaactcatcct 627

                                                                       
Query: 121 caccacttgaggctgatgtgtgtgggaaggcctcgtgactttgaaaaaggtagcgaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caccacttgaggctgatgtgtgtgggaaggcctcgtgactttgaaaaaggtagcgaccag 567

                                                                       
Query: 181 agccatttggtgtcaggatccaatggtggggctcagaaccagccctgccacagatgcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agccatttggtgtcaggatccaatggtggggctcagaaccagccctgccacagatgcacc 507

                                                                       
Query: 241 ggctgcttctgcatcagtcaattctaggattcagggggaggaagaggatgagcccaagag 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtctgcttctgcatcagtcaattctaggattcagggggaggaagaggatgagcccaagag 447

                                                                       
Query: 301 ctgcactgaattaccctcagtacgctagagaattatgaccttgcaaatgctgtctagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctgcactgaattaccctcagtacgctagagaattatgaccttgcaaatgctgtctagttc 387

                                                                       
Query: 361 ccagaagggaaaactgagcctgggtggcagcagagaggtacccatggctacccagatagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccagaagggaaaactgagcctgggtggcagcagagaggtacccatggctacccagatagc 327

                                                                       
Query: 421 agctttaggctccaagctccccagtgcaaccaggacactgggatccacttgagtgctctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agctttaggctccaagctccccagtgcaaccaggacactgggatccacttgagtgctctt 267

                                                                       
Query: 481 ttctccttatgttaaatgttagaaagcaatttggctattgtaattgggaaaagagaaggc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 266 ttctccttatgttaaatgttagaaagcaatttggctattgtaattgggaaaagagaagac 207

                 
Query: 541 ttgaga 546
           ||||||
Sbjct: 206 ttgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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