BAC Information

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BAC

Clone NameMSMg01-350L21
Chromosome4 (Build37)
Map Location 14,956,024 - 14,956,437
singlet/doubletsinglet
Overlap geneEfcbp1
Upstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551
Downstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350L21.T7 (MSMg01no350_l21.b1)MSMg01-350L21.TJ (MSMg01no350_l21.g1)
ACCAG462281AG462282
length790772
length of high quality
(start - end)
469 (78 - 546)413 (80 - 492)
definitionCHROMAT_FILE: MSMg01no350_l21.b1 PHD_FILE: MSMg01no350_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:46 2005CHROMAT_FILE: MSMg01no350_l21.g1 PHD_FILE: MSMg01no350_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATAC
GCGGAATTCTCACCTGATTACACCGAATGGCAGAGAAGCACCTGAAAAAA
TGCACAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTGCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCGAAGGATTCTTCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAGTAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAAGTAACACATTTCTC
AAAGGAACCCCCCCAAAATGTACTCTCTCGATAATGGGAAATAAACCCCA
AAACCAAGGAAACCCCAGAAATTATAAACTATTTCTCTAAACCAATGAAA
ATTTCCAAAAAAAAAAAATTGGCGTGGGGGAATCATAGTCCCCTCCTCTA
AAAAGGGACAATAAACCCCCCCTGTGAGGGAGTTTTCTTA
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCCTACTAAACATCGATT
AGCTCACTGAGATATCATTGTGTGCCTGCCTTGAAGGAGACAAATACACC
TGGAGTTGAGAATATGATTTAAGGGAAGGGAACTGTTCCCTTCAACCACC
AACACGTACTTTTTCCAGCAAGTGCTGTGCTCTGTAAAAAGGTTGTTGTG
TCAGATGTCCTAGGGCTGCTGGGGGTCTGACAAATTCCTACTCTAATTCC
TTTTTATCAGATTGGTAATCACTTGTTATATCAGCTGAAAAAAAATCCTG
CCACAAAATGATTAAGACAAAGGTATTTAAAATACATTTTCTATCACATG
CACTTGATTAGAGAATGGTTTGTTCACTGTTACATTCCTTTTGGTAGCTA
GCATCAGGCAACATTTAGTGCATTGGGGCTGCTCCTTCTGAGTTAGAGAC
ATTAAGGAAGCTCTCAGCCACCACGTACTAAAGCTTTGGTTGTTTTGATA
TTGCTCTTCCCAAGAAATCTGGGGTTCTGTGGGTTGAGCCGGCTTTTGTC
GTTGGCTTTTGAAANTTGAAGCAAAAGATTCCGCTATGAAATAATTTTTA
AGGGGGAGCTAGGGCCCCTATTGCCTTTTTTTTTCTAAGTGGGGTGAAAA
GGATTTTCGCCTCTTCAAAAACCGTTTATTCCTTTCTAACAAAAATCCTC
GCTAAACTCCCTCTTCTCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_l21.g1 MSMg01no350_l21.g1 CHROMAT_FILE:
MSMg01no350_l21.g1 PHD_FILE: MSMg01no350_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:46 2005
         (413 letters)



>mm_chr4_14955824_14956637
          Length = 814

 Score =  762 bits (394), Expect = 0.0
 Identities = 409/414 (98%), Gaps = 1/414 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcctactaaacatcgattagctcactgagatatcattgtgtgcctgccttgaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcctactaaacatcgattagctcactgagatatcattgtgtgcctgccttgaaggag 260

                                                                       
Query: 61  acaaatacacctggagttgagaatatgatttaagggaagggaactgttcccttcaaccac 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acaaatacacctggagttgagaatatgatttaagagaagggaactgttcccttcaaccac 320

                                                                       
Query: 121 caacacgtactttttccagcaagtgctgtgctctgtaaaaaggttgttgtgtcagatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacacgtactttttccagcaagtgctgtgctctgtaaaaaggttgttgtgtcagatgtc 380

                                                                       
Query: 181 ctagggctgctgggggtctgacaaattcctactctaattcctttttatcagattggtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagggctgctgggggtctgacaaattcctactctaattcctttttatcagattggtaat 440

                                                                       
Query: 241 cacttgttatatcagctgaaaaaaaa-tcctgccacaaaatgattaagacaaaggtattt 299
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 cacttgttatatcagctgaaaaaaaaatcctgccacaaaatgattaagacaaaggtattt 500

                                                                       
Query: 300 aaaatacattttctatcacatgcacttgattagagaatggtttgttcactgttacattcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatacattttctatcacatgcacttgattagagaatggtttgttcactgttacattcc 560

                                                                 
Query: 360 ttttggtagctagcatcaggcaacatttagtgcattggggctgctccttctgag 413
           ||||| |||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 561 ttttgatagctagcatcaggcaacatttagtgcactagggctgctccttctgag 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 814
Length adjustment: 9
Effective length of query: 404
Effective length of database: 805
Effective search space:   325220
Effective search space used:   325220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)